Search Results for "spectrum"
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Showing 30 open source projects for "spectrum"
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AUDio MEasurement System
PC based Oscilloscope and Spectrum analyzer using sound card
AUDio MEasurement System - a multi-platfrom system for audio measurement through sound card in the PC. It contains: generator, oscilloscope, audio spectrum analyzer (FFT) and frequency sweep plot. Compiles and works under Linux, Windows and MacOS. Source code is available in "git" and as ZIP snapshot. For more information see README.md -
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RSM
Radiation Spectrum Method : a modal BPM (Beam Propagation Method)
...Of that way any waveguide geometry can be handled. Several plots are available : refractive index plot, field propagation plot and modes spectrum plot. This permits, with the interpretation of the guided and radiation modes spectrum, a physical understanding of the propagation mechanisms in the integrated optical device under evaluation. The complex geometry of the component is discretized in a stack of multilayer dielectric waveguides. For Windows, download "RSM_visit_update2.zip" , this file needs the last version of the software be first installed : "RSM VisitSetup2.ex -
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The Sashimi project hosts the Trans-Proteomic Pipeline (TPP), a mature suite of tools for mass-spec (MS, MS/MS) based proteomics: statistical validation, quantitation, visualization, and converters from raw MS data to the open mzML/mzXML formats.
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UniversalMer
A CLI k-mer counting tool for multiple sizes of k at once.
...It is available for DNA, RNA, and protein sequences. The program counts and summarizes the exact frequency of all k-mers from 1-mer to a user-defined maximum length (kmax). Analyzing the k-mer spectrum across multiple values of k can be done in seconds. This program is designed for bioinformatics researchers and scientists. -
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SigPack
SigPack - A signal processing library using Armadillo
SigPack is a C++ signal processing library using the Armadillo library as a base. The API will be familiar for those who has used IT++ and Octave/Matlab. -
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dotScope
Scientific shell for live experiment
...Release 2.5: Store data to files, Several desktops, Complete version of postprocessing modules (Calculation, Linearization, Spline, Line regression, Statistic - mean and RMSD, Spectrum analyzer), Output table data for series experiments -
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LinAsm
Collection of fast and optimized assembly libraries for x86-64 Linux
...It implements many common and widely used algorithms for array manipulations: searching, sorting, arithmetic and vector operations, unit conversions; fast mathematical and statistic functions; numbers and time converting algorithms; finite impulse response (FIR) digital filters; spectrum analysis algorithms, Fast Hartley transformation; CPU cache friendly functions and extremely fast abstract data types (ADT) such as hash tables b-trees, and much more. LinAsm libraries are written on FASM assembly language. They are stable and have appropriate benchmarks for many units. All libraries are well documented and grouped by their functionality. ... -
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ntx
Neutrality tests using the SNP site frequency spectrum
Tests on "neutrality" are designed to detect systematic deviations from chance patterns in genetic data. This tool computes for a given SNP site frequency spectrum some standard test statistics like Tajima's D, Fay & Wu's H, etc. Additionally, the user may adapt the tests to specific demographies by specifying non-standard first and secondary moments. These can be obtained e.g. from simulations. -
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This is fork of SegDSee - SEG-D/B viewer, originally by Segrey Pavlukhin (https://mail.dmng.ru/freeware/?lang=en), modified by Pavel Gridin
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DoseInHumanBody
Patient dose from medical X-ray and other sources
...This package does not contain all data required to run, i.e. does not contain GEANT4 libraries and GEANT4 nuclear data (for saving space). It does contain however the X-Ray spectrum data. Read README.txt me inside Build folder for how to fix it. Source code included. Also, available on GitHub: https://github.com/ZiliasTheSaint/DoseInHumanBody.git -
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stellarics
Inverse Compton emission from heliospheres of sun and stars
Cosmic ray electrons scatter on the photon fields around stars, including the sun, to create gamma rays by the inverse Compton effect. This program computes the spectrum and angular distribution of this emission. The software also includes general-purpose routines for inverse Compton scattering on a given electron spectrum, for example for interstellar or astrophysical source modelling. For further information see these publications: http://arxiv.org/abs/astro-ph/0607563, http://arxiv.org/abs/0801.2178, http://arxiv.org/abs/1104.2093, http://adsabs.harvard.edu/abs/2013NuPhS.239..266O and this conference presentation: https://confluence.slac.stanford.edu/download/attachments/130879399/poster_symposium_sun_2012.pdf and the corresponding conference paper http://arxiv.org/abs/1307.6798 2017 June 16: now available from gitlab https://gitlab.mpcdf.mpg.de/aws/stellarics which will be used for future develpments. -
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tranci
Calculate electronic properties of transition metal atoms
Computational package to study transition metal atoms in surfaces, focusing on the effects of crystal field, spin orbit coupling and electronic interactions. Inputs are written in an user friendly interface, and creates a pdf and graphics with the results. -
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Trowel - Sequencing Error Corrector
Error Correction Module for Illumina Sequencing Reads
Trowel is an error correction module for Illumina sequencing reads, which is based on the k-mer spectrum approach. This tool is the first tool that uses a quality threshold instead of a coverage cutoff in order to extract trusted k-mers. This tool guarantees high accuracy and speed. This tool has been developed since 21. Jan. 2013 by Euncheon Lim in Prof. Dr. Detlef Weigel's Lab in Max-Planck Institute for Developmental Biology. -
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adc2pc
Capture & visualize digital measurements on PC
Application was designed to provide user a capability to visualize ADC measurements flow on PC monitor and to save data on a hard disk. At a present moment application uses serial port connection for data capturing. That is why at first you should provide all hardware drivers and other resources for ADC that allow to communicate with PC. -
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galprop_skymap_convert
Convert galprop skymaps to standard healpix
...This allows free rotation of the sphere, avoiding the distortions of Aitoff and other projections often used. It is a very practical way to view and prepare skymap plots of GALPROP output. GALPROP outputs a spectrum per HealPix pixel, while Aladin requires each energy to be stored as a column. A conversion is required to make GALPROP skymaps viewable in Aladin. This program performs this conversion, outputs both the original energy bins and energy-integrated spectra, and in addition convolves with a user-defined Gaussian both in energy bins and energy-integrated. ... -
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Musket - short read error corrector
a parallel short-read error corrector for Illumina sequencing
Musket is an efficient multistage k-mer based corrector for Illumina short read data. This corrector employs the k-mer spectrum approach and introduces three correction techniques in a multistage workflow. Our performance evaluation results, in terms of correction quality and de novo genome assembly measures, reveal that Musket is consistently one of the top performing substitution-error-based correctors. In addition, Musket is multi-threaded using a master-slave model and demonstrates superior parallel scalability compared to all other evaluated correctors as well as a highly competitive overall execution time. -
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A C++ class to enable prediction of the reflectance spectrum of two overprinted inks (i.e., solids), using the inverted Viggiano trapping equation.
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A sleep research experiment manager, EDF (EEG, EMG etc) with power spectrum analysis and visualisation, and Process S ('sleep pressure') estimation following Achermann et al (1993).
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Cognitive Radio Using USRP
Implementation Of Cognitive Radio Using USRP And OpenBTS
This Program written by C++ to add Cognitive Radio Module to OpenBTS program (GSM Network) With USRP V1 to allow it to scan Spectrum band of GSM and choose the best available channel of bandwidth 200 kHz and use it in OpenBTS Program -
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UDAV is program for data arrays visualization based on MathGL library. It support wide spectrum of graphics, simple script language and visual data handling and editing.
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Finds the cosmological power spectrum from a N-body simulation using the MPI FFTW library. May be run as a parallel computation for increased resolution. Reads in binary Gadget2 files.
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nmrproc shall be an NMR (nuclear magnetic resonance) data processing application supporting many file formats, a highly intuitive hence easy-to-use interface for routine NMR spectrum processing and generation of publication quality spectra.
