Musket - short read error corrector Icon

Musket - short read error corrector

beta

a parallel short-read error corrector for Illumina sequencing

Add a Review
6 Downloads (This Week)
Last Update:
Download musket-1.1.tar.gz
Browse All Files
BSD Linux

Description

Musket is an efficient multistage k-mer based corrector for Illumina short read data. This corrector employs the k-mer spectrum approach and introduces three correction techniques in a multistage workflow. Our performance evaluation results, in terms of correction quality and de novo genome assembly measures, reveal that Musket is consistently one of the top performing substitution-error-based correctors. In addition, Musket is multi-threaded using a master-slave model and demonstrates superior parallel scalability compared to all other evaluated correctors as well as a highly competitive overall execution time.

Musket - short read error corrector Web Site

KEEP ME UPDATED

Write a Review

User Reviews

Be the first to post a review of Musket - short read error corrector!

Additional Project Details

Intended Audience

Healthcare Industry, Science/Research

User Interface

Console/Terminal, Command-line

Programming Language

C++

Registered

2012-08-14

Thanks for helping keep SourceForge clean.

Screenshot instructions:
Windows
Mac
Red Hat Linux   Ubuntu

Click URL instructions:
Right-click on ad, choose "Copy Link", then paste here →
(This may not be possible with some types of ads)

More information about our ad policies
X

Briefly describe the problem (required):

Upload screenshot of ad (required):
Select a file, or drag & drop file here.

Please provide the ad click URL, if possible:

Get latest updates about Open Source Projects, Conferences and News.

Sign up for the SourceForge newsletter:

No, thanks