1506 projects for "command line tools" with 2 filters applied:

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  • 1
    SAM (Sequence Alignment/Map) is a flexible generic format for storing nucleotide sequence alignment. SAMtools provide efficient utilities on manipulating alignments in the SAM format. The main samtools source code repository moved to GitHub in March 2012. For ongoing development since then, see http://github.com/samtools/samtools
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    Downloads: 515 This Week
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  • 2
    Biosignal Tools
    BioSig is a software library for processing of biomedical signals (EEG, ECG, etc.) with Matlab, Octave, C/C++ and Python. About 50 different data formats are supported.
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    Downloads: 592 This Week
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  • 3
    Community Z Tools

    Community Z Tools

    Tool support for the Z formal notation

    Community Z Tools Project (CZT): Tools for editing, typechecking and animating Z specifications and related notations. Includes a Java framework for building formal methods tools. NOTE: development of CZT has now moved to GitHub: https://github.com/community-z-users/czt
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    Downloads: 60 This Week
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  • 4
    Tile38

    Tile38

    Ultra Fast Geospatial Database & Geofencing Server

    ...It supports a variety of object types including lat/lon, Geohash, bbox, GeoJSON, QuadKey, and XYZ tile; and is capable of operations like Nearby, Within, and Intersects. There’s also built-in support for many popular tools. Tile38 is made up of 3 main components: the server, command line interface tool and server benchmark tool. It is completely free and open source and is available for OSX, Linux, FreeBSD, and Windows.
    Downloads: 0 This Week
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  • 5
    COLMAP

    COLMAP

    Structure-from-Motion and Multi-View Stereo

    COLMAP is a general-purpose Structure-from-Motion (SfM) and Multi-View Stereo (MVS) pipeline with a graphical and command-line interface. It offers a wide range of features for the reconstruction of ordered and unordered image collections. The software is licensed under the new BSD license.
    Downloads: 58 This Week
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  • 6
    Library of Java code to interact with the data-recording formats (RPFITS and PSRFITS) used at the Australia Telescope National Facility (ATNF). It also provides tools for extracting metadata from the files for supply to Virtual Observatory instances.
    Downloads: 0 This Week
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  • 7
    Grafana

    Grafana

    Leading open-source visualization and observability platform

    Grafana OSS is the leading open-source platform for visualization and observability. It enables teams to query, visualize, alert on, and explore telemetry data from multiple sources in a single interface. With support for 100+ data source plugins—including Prometheus, Loki, Elasticsearch, InfluxDB, SQL/NoSQL databases, and OpenTelemetry—Grafana helps teams correlate metrics, logs, and traces across applications and infrastructure. Users can build interactive dashboards with rich...
    Downloads: 28 This Week
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  • 8

    GeographicLib

    Geographic library

    GeographicLib is a small C++ library for: geodesic and rhumb line calculations; conversions between geographic, UTM, UPS, MGRS, geocentric, and local cartesian coordinates; gravity (e.g., EGM2008) and geomagnetic field (e.g., WMM2020) calculations.
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    Downloads: 43,081 This Week
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  • 9
    GWtool

    GWtool

    Simple tools for working with gravitational waves

    GWtool: simple tools for working with gravitational waves
    Downloads: 8 This Week
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  • 10
    astroTools

    astroTools

    Command-line tools for astronomy and astrophysics

    Command-line tools for astronomy and astrophysics, written in Fortran.
    Downloads: 0 This Week
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  • 11
    gnuplot

    gnuplot

    A portable, multi-platform, command-line driven graphing utility

    A famous scientific plotting package, features include 2D and 3D plotting, a huge number of output formats, interactive input or script-driven options, and a large set of scripted examples.
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    Downloads: 4,711 This Week
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  • 12
    SAGA GIS
    SAGA - System for Automated Geoscientific Analyses - is a Geographic Information System (GIS) software with immense capabilities for geodata processing and analysis. SAGA is programmed in the object oriented C++ language and supports the implementation of new functions with a very effective Application Programming Interface (API). Functions are organised as modules in framework independent Module Libraries and can be accessed via SAGA’s Graphical User Interface (GUI) or various scripting...
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    Downloads: 7,732 This Week
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  • 13
    Dependency Finder
    Extracts dependencies and OO metrics from Java class files produced by most Java compilers. Computes API differences between versions. No source needed. Includes both Swing and command-line interfaces, with XSL stylesheets for formatting output.
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    Downloads: 2 This Week
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  • 14
    gretl

    gretl

    A cross-platform statistical package for econometric analysis

    gretl is a cross-platform software package for econometric analysis, written in the C programming language.
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    Downloads: 11,183 This Week
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  • 15

    Subread

    High-performance read alignment, quantification and mutation discovery

    The Subread software package is a tool kit for processing next-gen sequencing data. It includes Subread aligner, Subjunc exon-exon junction detector and featureCounts read summarization program. Subread aligner can be used to align both gDNA-seq and RNA-seq reads. Subjunc aligner was specified designed for the detection of exon-exon junction. For the mapping of RNA-seq reads, Subread performs local alignments and Subjunc performs global alignments. Subread and Subjunc were published in...
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    Downloads: 2,028 This Week
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  • 16
    evTools

    evTools

    Tools to analyse output from the stellar-evolution code ev/STARS/TWIN

    The evTools package provides tools to manipulate and display output from the binary stellar-evolution code ev (also known as STARS and TWIN).
    Downloads: 0 This Week
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  • 17
    Icarus Verilog is an open source Verilog compiler that supports the IEEE-1364 Verilog HDL including IEEE1364-2005 plus extensions.
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    Downloads: 593 This Week
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  • 18
    The Sashimi project hosts the Trans-Proteomic Pipeline (TPP), a mature suite of tools for mass-spec (MS, MS/MS) based proteomics: statistical validation, quantitation, visualization, and converters from raw MS data to the open mzML/mzXML formats.
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    Downloads: 20 This Week
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  • 19
    Enhanced version of Brill's Parts-of-Speech Tagger with built-in Tokenizer and Lemmatizer.
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    Downloads: 10 This Week
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  • 20
    GCBASIC
    GCBASIC is an open-source BASIC compiler for 8 bit Microchip PIC, Atmel AVR legacy, AVRDx and LGT microcontrollers. See https://ko-fi.com/post/The-Story-of-GCBASIC-Making-Microcontroller-Progr-D1D319SJ72 for story of GCBASIC. This is a continuous release project. The latest release is always available. This will give you the most complete development toolchain to create and program 8-bit PIC, AVR and LGT microcontrollers. We have added new capabilities that make GCBASIC the...
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    Downloads: 234 This Week
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  • 21
    The 3D Toolkit provides algorithms and methods to process 3D point clouds. In includes automatic precise registration (6D simultaneous localization and mapping, 6D SLAM) and other tools, e.g., a fast 3D viewer, plane extraction software, etc.
    Downloads: 2 This Week
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  • 22
    GMAT

    GMAT

    General Mission Analysis Tool

    The General Mission Analysis Tool (GMAT) is an open-source tool for space mission design and navigation. GMAT is developed by a team of NASA, private industry, and public and private contributors. The GMAT development team is pleased to announce the release of GMAT version R2026a. For a complete list of new features, compatibility changes, and bug fixes, see the R2026a Release Notes in the Users Guide.
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    Downloads: 1,596 This Week
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  • 23
    PSRCHIVE is an application suite and development library for use in the storage and analysis of pulsar astronomical data. It includes an extensive range of algorithms and tools commonly used in a wide variety of experiments.
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    Downloads: 2 This Week
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  • 24
    Open Programmer

    Open Programmer

    An USB programmer for PIC, dsPIC, AVR, serial memories

    An USB programmer for various devices, including PIC, dsPIC, AVR microcontrollers, and various kinds of serial eeproms
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    Downloads: 125 This Week
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  • 25
    Asymptote

    Asymptote

    2D & 3D TeX-Aware Vector Graphics Language

    Asymptote is a powerful descriptive vector graphics language for technical drawing, inspired by MetaPost but with an improved C++-like syntax. Asymptote provides for figures the same high-quality typesetting that LaTeX does for scientific text.
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    Downloads: 347 This Week
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