Search Results for "void based linux" - Page 31
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Showing 4627 open source projects for "void based linux"
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This project, initially developed at University College London, contains programs to perform rigid, affine and non-linear registration of nifti or analyse images. Two versions of the algorithms are included, a CPU- and a GPU- (using CUDA) based implementation.
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macosx_gpib_lib
Porting of linux-gpib to Mac os x
...The performance is not as good as linux-gpib is as this library uses Cocoa and not low level functions. -
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popt4jlib
Parallel Optimization Library for Java
popt4jlib is an open-source parallel optimization library for the Java programming language supporting both shared memory and distributed message passing models. Implements a number of meta-heuristic algorithms for Non-Linear Programming, including Genetic Algorithms, Differential Evolution, Evolutionary Algorithms, Simulated Annealing, Particle Swarm Optimization, Firefly Algorithm, Monte-Carlo Search, Local Search algorithms, Gradient-Descent-based algorithms, as well as some well-known... -
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PPLine
SNP calling, annotation and gene/transcripts expression quantification
PPLine is a Python-based suite aimed to process raw RNA-seq or Exome-seq data. PPLine provides: - read mapping (STAR/Tophat2/bowtie/bowtie2), including novel splice junsctions discovery - gene and transcript expression estimation (HTSeq-count/Cufflinks) - SNP calling with BQSR and indel realignment (samtools/GATK) - variant annotation (Annovar) - novel transcripts discovery (Cufflinks) - predicting proteotypic peptides and creating ref/alt proteins fasta-database - integration of... -
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JPIV
Particle Image Velocimetry
JPIV is a platform independent, graphical stand-alone application for Particle Image Velocimetry (PIV) written in Java. PIV is an optical technique for measuring fluid flow velocities. JPIV moved to GitHub. Please visit us at: https://eguvep.github.io/jpiv/ -
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Network software for annotation and quality control of distributed data. Supported by NSF: DBI 0646266 and NSF: DBI 0960535. http://wiki.filteredpush.org
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eviacam
webcam based mouse emulator
Mouse replacement software that moves the pointer as you move your head. It works on standard PCs equipped with a web camera. No additional hardware is required. Based on the award winning Facial Mouse software. For Linux and Windows systems. -
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Calculation of camshafts - allows to define a camshaft profile on the set trajectory which should provide the given mechanism. The trajectory can be set graphically, co-ordinates or function.
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Acoustic Research Tool (ART)
Acoustic Simulation Library for Frequency and Time Domain Simulations.
ART is a flexible simulation framework for wind instruments. It includes a growing library of modelling elements. So far bore discontinuities, branches, tone holes, cylindrical and conical tubes, Bessel horns and bent tubes are available for frequency domain modelling. In the time domain generic bidirectional propagation elements, scattering elements, fractional delays, convolution with reflection functions and general z-domain networks are available and can be described using MuParserX... -
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BisSNP
Bisulfite-seq/NOMe-seq SNPs & cytosine methylation caller
Now in Github: https://github.com/dnaase/Bis-tools/tree/master/Bis-SNP BisSNP is a package based on the Genome Analysis Toolkit (GATK) map-reduce framework for genotyping in bisulfite treated massively parallel sequencing (Bisulfite-seq, NOMe-seq and RRBS) on Illumina platform. It uses bayesian inference with either manually specified or automatically estimated methylation probabilities of different cytosine context(not only CpG, CHH, CHG in Bisulfite-seq, but also GCH et.al. in other... -
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lr2rmats
Long read to rMATS
lr2rmats is a Snakemake-based light-weight pipeline which is designed to utilize both third-generation long-read and second-generation short-read RNA-seq data to generate an enhanced gene annotation file. The newly generated annotation file could be provided to rMATS for differential alternative splicing analysis. More information can be found at https://sourceforge.net/p/lr2rmats/wiki/Home/ -
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Inelastica
Transport code and tools based on SIESTA and TranSIESTA (DFT-NEGF)
NOTE: The Inelastica project moved to https://github.com/tfrederiksen/inelastica/ in February 2018. Pre- and post-processing tools for SIESTA (DFT, quantum chemistry) and TranSIESTA (quantum transport): (1) Calculate phonon frequencies, e-ph couplings, and inelastic contributions to the conductance (IETS). (2) Access Hamiltonian etc from Python. Some code documentation and installation instructions are available at this mediawiki page: http://dipc.ehu.es/frederiksen/inelastica/index.php. -
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KalypsoBASE is a Desktop-GIS built on Eclipse. It's focus lies on modelling gis data using GML Application-Schemata. Features contain generic dialogs based on GML, maps based on OGC's SLD, and other tools like a charting framework or API for timeseries
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CABBaGe
Classification Algorithm Based on a Bayesian method for Genomics
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The goal of the Elle Project is to provide a general purpose modelling environment for the simulation of rock microstructure evolution. The code is based around a unified description of 2D microstructure.
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Computer Science (OSSU)
Path to a free self-taught education in Computer Science
OSSU (Open Source Society University) Computer Science is a free, peer‑maintained, self‑paced undergraduate-level CS curriculum using high-quality open online courses (often from top universities), structured to deliver a thorough CS education without tuition. It is designed according to the degree requirements of undergraduate computer science majors, minus general education (non-CS) requirements, as it is assumed most of the people following this curriculum are already educated outside the... -
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This application allow user to predict dissolution profile of solid dispersion systems based on algorithms like symbolic regression, deep neural networks, random forests or generalized boosted models. Those techniques can be combined to create expert system. Application was created as a part of project K/DSC/004290 subsidy for young researchers from Polish Ministry of Higher Education.
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Rotations Conversion Library
Library for working with 3D rotations in C++
The Rotations Conversion Library (RCL) is a collection of C++ functions that address common computations and numerical handling of rotations in 3D Euclidean space, including support for rotation matrices (`Rotmat`), Quaternions (`Quat`), intrinsic ZYX Euler angles (`Euler`), fused angles (`Fused`) and tilt angles (`Tilt`). In addition to the core competency of being able to convert between each of the representations, operations such as inversion, ZYX yaw extraction, fused yaw extraction,... -
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PLEASE NOTE THAT THIS PROJECT HAS FINISHED. THE FILES ARE HERE AS AN ARCHIVE. MDV: XML data management and presentation framework. For download and instructions please go to mdv.sourceforge.net.
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OpenGIA
General Intelligence Algorithm
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FlightAirMap
Flights, vessels, satellites and trackers realtime 2D/3D display
Open source project displaying live aircrafts, ships, satellites or trackers on 2D/3D map. Browse through the data based on a particular aircraft, airline, airport, tracker or vessel to search through the database or see extensive statistics. Can use ADS-B in SBS1 format (dump1090, Radarcape,...), VRS, VA (VATSIM, IVAO whazzup.txt, phpvms,...), ACARS (acarsdec, acarsdeco2), APRS, AIS as datasource. -
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Latin Square Toolbox
Generates Latin squares and counts their transversals
The Latin Square Toolbox contains software tools for efficiently generating Latin squares and counting their transversals with various user-configurable options. This open source release aims to help educate folks on Latin squares and their important applications to cryptography. This version contains three tools: 0. Latin Square Generator (LSG) 1. Latin Square Transversal Counter (LSTC) 2. Latin Square Property Checker (LSPC) -
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GNAT
GNAT recognizes gene names in text and maps them to NCBI Entrez Gene
GNAT is a BioNLP/text mining tool to recognize and identify gene/protein names in natural language text. It will detect mentions of genes in text, such as PubMed/Medline abstracts, and disambiguate them to remove false positives and map them to the correct entry in the NCBI Entrez Gene database by gene ID. March 2017: We started to upload GNAT output on Medline. See files/results/medline/. -
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isiKnock
In silico knockouts for signaling pathways
Signaling pathways are complex and intertwined processes. The perturbation of biological systems can reveal the complicated interplay and dependencies of pathway components. isiKnock is a software to automatically conduct and visualize in silico knockouts for signaling pathways (Hannig et al. 2019). isiKnock predicts the knockout behavior based on the calculation of signal flows at steady state. For an explanation of the concept of in silico knockouts, we refer to Scheidel et al. 2016...
