Showing 21 open source projects for "nifti"

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  • 1
    libvips

    libvips

    A fast image processing library with low memory needs

    ... of image formats, including JPEG, JPEG2000, JPEG-XL, TIFF, PNG, WebP, HEIC, AVIF, FITS, Matlab, OpenEXR, PDF, SVG, HDR, PPM / PGM / PFM, CSV, GIF, Analyze, NIfTI, DeepZoom, and OpenSlide. It can also load images via ImageMagick or GraphicsMagick, letting it work with formats like DICOM. It comes with bindings for C, C++, and the command-line. Full bindings are available for Ruby, Python, PHP, C# / .NET, Go, and Lua.
    Downloads: 8 This Week
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  • 2
    IDV Interrelated MRS Datasets Viewer
    This project was supported by: European Union's Horizon 2020 research and innovation program under the Marie Sklodowska-Curie grant agreement No 813120 (INSPiRE-MED)
    Downloads: 0 This Week
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  • 3
    BrukerEyes

    BrukerEyes

    BrukerEyes is an open-source package for Bruker datasets management

    BrukerEyes is a cross-platform open-source package for Bruker datasets management. It helps scientists to explore their datasets easily. This project was supported by: European Union's Horizon 2020 research and innovation program under the Marie Sklodowska-Curie grant agreement No 813120 (INSPiRE-MED) © Institute of Scientific Instruments of the Czech Academy of Sciences.
    Downloads: 0 This Week
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  • 4
    18F-DOPA & 123I-FP-CIT templates

    18F-DOPA & 123I-FP-CIT templates

    18F-DOPA & 123I-FP-CIT (Ioflupane - DaTSCAN) human templates for SPM.

    The 18F-DOPA and 123I-FP-CIT (Ioflupane - DaTSCAN) templates are intended for use as templates for SPM automated normalisation. Created for SPM8 but SPM12 compatible. Available in NifTI file format. The updated Templates are symmetrical and adjusted to MNI-space templates from 12 (18F-DOPA) and 30 controls without evidence of nigrostriatal degeneration (123I-FP-CIT). Authors: I. Huertas, J.A. Lojo, F.J. García-Gómez & D. García-Solís. Contact: javier191185@gmail.com Terms of use...
    Downloads: 0 This Week
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  • 5
    SimPET

    SimPET

    A web platform for the MC simulation of realistic brain PET data

    SimPET (http://www.sim-pet.org) is an open, efficient, and user‐friendly online platform for the generation of synthetic brain PET datasets. The platform offers the ability to generate realistic activity and attenuation maps from patient's PET/CT and MRI images. These maps can then be simulated, and sinograms and simulated images can be downloaded. More advanced features can be obtained by using the SimPET...
    Downloads: 0 This Week
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  • 6

    uTIlzReg

    Diffeomorphic registration of 2D/3D nifti images

    Diffeomorphic registration of 3D images, plus several tools. The program is written in C++ and can be easily compiled using CMake. It works using non-compressed nifti images (.nii). Successfully compiled under linux ubuntu and mac OSX with gcc. NEW: Successfully compiled under Windows with MS Visual C++ 2010 the 19/09/12 (revision 46)
    Downloads: 0 This Week
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  • 7
    Nifty Reg
    This project, initially developed at University College London, contains programs to perform rigid, affine and non-linear registration of nifti or analyse images. Two versions of the algorithms are included, a CPU- and a GPU- (using CUDA) based implementation.
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    Downloads: 21 This Week
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  • 8
    Brain imaging software produced by the Brain Research Imaging Centre of The University of Edinburgh.
    Downloads: 3 This Week
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  • 9
    3DBrainExplorer is a lightweight OpenGL-based 3D renderer for scientific visualization of volumetric data (NIfTI) featuring real-time image manipulation, AAL brain labels (Tzourio-Mazoyer et al., 2002), SPM5 statistical images and stereo display.
    Downloads: 0 This Week
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    A CRM and Sales Data Management Platform for Multi-Line Sales Teams

    The CRM, sales reporting, and commission tracking tool uniquely tailored to the needs of manufacturers, sales reps, and distributors.

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  • 10
    CamBA is a Linux package for statistical analysis, by script/GUI, of neuroimaging data (fMRI/sMRI), developed at the Brain Mapping Unit, University of Cambridge. Non-parametric permutation-based statistics. Input images: 4D NiFTI files, output: HTML/
    Downloads: 0 This Week
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  • 11
    Ogles -  OpenGL/OIV  stereotactic tool
    Ogles strives to provide an open source data model for neuroscientific data visualization and analytics. Ogles started out as a planning system for frame based stereotactic neurosurgery. Ogles(1) is discontinued. Release candidate (RC) is Ogles2b. Ogles is accompanied by a simple DICOM reader and NIfTI converting tool (Sdr2).
    Downloads: 1 This Week
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  • 12
    CAnaBIS stands for "Computer Analysis of Brain Image Statistics". Its aim is to provide a C++ library of file I/O and efficient computational routines for NifTI brain images.
    Downloads: 0 This Week
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  • 13

    libznz with zindex

    This is a fast version of libznz used in NIfTI C library

    This library provides notable speed-up for seeking in large compressed NIfTI files. It is compatible with the libznz interface which is part of NIfTI C library to handle multidimensional (mostly MRI) images. Only the replacement of the currently available libznz library is necessary. To reach the expected speed-up the compressed NIfTI data has to be indexed with the included tool. To compile the binaries, the sources available in this project have to be replaced with the ones in znzlib...
    Downloads: 0 This Week
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  • 14
    MatrixUser

    MatrixUser

    A Multi-functional GUI-based Program for Image Processing and Analysis

    The MatrixUser project is moving to GitHub, the latest version can be obtained from https://leoliuf.github.io/MatrixUser/ Most of the medical images (e.g. CT, MRI, PET, etc.) comprises multiple frames which represent slices, phases, timing etc. from the same imaging object. Those images can be saved as multidimensional matrices in Matlab thanks to Matlab's powerful support of multidimensional data representation. However, within Matlab, most of image manipulation functions are limited or...
    Downloads: 0 This Week
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  • 15

    DRAMMS

    A Deformable Medical Image Registration Toolbox

    ... development, etc); -- Registration under missing correspondences (e.g., vascular lesions, tumors, histological cuts). DRAMMS runs in command line in UNIX/Mac OS, It accepts Nifti/ANALYZE/MetaImage image formats. It is fully-automatic --- takes two input images, and generates a registered image and (optionally) the deformation field. More information (installation, tutorial, manual, demonstration, FAQ, etc) can be found at http://www.rad.upenn.edu/sbia/software/dramms/ .
    Downloads: 1 This Week
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  • 16

    niftilib

    ** MAIN SITE IS NOW: https://github.com/NIFTI-Imaging/nifti_clib **

    niftilib is a collection of i/o routines for the nifti1 neuroimage data format. C (nifticlib), Java (niftijlib), Matlab (niftimatlib), and Python (pynifti) code is available. For nifti format info see: http://nifti.nimh.nih.gov/
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    Downloads: 62 This Week
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  • 17
    This is a general purpose medical image viewer, converter, and manager. It supports reading of DICOM, ACR/NEMA, Papyrus, Nifti, Analyze, and raster images. The goal of this project is to create a very powerful and simple medical image viewer.
    Downloads: 9 This Week
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  • 18
    Volumetric file viewer for the human brain. Easy, powerful and flexible fMRI/MRI brain research and clinical neuro-surgery tool. Using state of the art open VTK 3D library, the proven Qt GUI toolkit, coded in Python.
    Downloads: 0 This Week
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  • 19
    GlassBrain
    Glass Brain is a tool specifically designed for displaying neural connections within the human brain given multidimensional scan data and a connectivity graph. This project benefits from Qt, VTK, ITK, and CMake.
    Downloads: 0 This Week
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  • 20
    The R2AGUI converts MRI data from the raw PHILIPS PAR/REC format to the popular ANALYZE 7.5 format or the newer Nifti 1.0 format, which is used in SPM (Software package for fMRI post-processing). It has an easy to use interface, and can batch process man
    Downloads: 0 This Week
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  • 21
    MATLAB tools to create overlay images from NIfTI or ANALYZE files (neuroimaging format) and convert them to DICOM for use in the clinical environment. Allows radiologists and neurosurgeons easy access to fMRI data. http://paradime.net/research/
    Downloads: 5 This Week
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