Transcriptome assembler for RNA-seq
Accurately discover viral integration events and fusion transcripts
identification of sequence variant associated with splicing event
MITP - conserve & novel miRNA identification & target prediction tool
RNA modification detection by RT signatures in deep sequencing data
Software for studying bacterial colony features
ChIP-RNA-sequencing-processing (ChIP-RNA-seqPRO)
DNA/RNA Sequence K-mer Toolkit
REDO - RNA Editing Detection in Organelle
Assessing mRNA integrity directly from RNA-Seq data
Tools for genomic analysis
a CRISPR guide RNA design and off-target searching to
OLego – short or long RNA-seq read mapping to discover exon junction
A novel approach to linking 16S rRNA amplicon profiles to metagenomes
Scalable and accurate targeted gene assembly for large-scale NGS data
Illinois Mayo Taxonomy Operations for RNA Database Operations
A hidden Markov model to predict clustered RNA motif sites
Reference-based transcriptome reconstruction software
C++ and Python code for simulating RNA virus replication