Open Source C Scientific/Engineering Software - Page 2

SAM (Sequence Alignment/Map) is a flexible generic format for storing nucleotide sequence alignment. SAMtools provide efficient utilities on manipulating alignments in the SAM format. The main samtools source code repository moved to GitHub in March 2012. For ongoing development since then, see http://github.com/samtools/samtools

XTrackCAD is a open-source, free, CAD program for designing model railroad layouts. You can easily create layout of any scale or size. Libraries for many brands, scales and gauges of track and turnouts/points and model structures are included. Adding new components is easy with the built-in editor. It runs on Windows, Mac and Linux,

GNUSim8085 is a simulator and assembler for the Intel 8085 Microprocessor. For downloading latest release please head to the website - https://gnusim8085.github.io/ For source code - https://github.com/GNUSim8085/GNUSim8085

TILP (formerly GtkTiLink) can transfer data between Texas Instruments graphing calculators and a computer. It works with all link cables (parallel, serial, Black/Gray/Silver/Direct Link) and it supports the TI-Z80 series (73..86), the TI-eZ80 series (83PCE, 84+CE), the TI-68k series (89, 92, 92+, V200, 89T) and the Nspire series (Nspire Clickpad / Touchpad / CX, both CAS and non-CAS). The project is now managed on Github, https://github.com/debrouxl/tilp_and_gfm . It uses the libti* libraries, https://github.com/debrouxl/tilibs . Install script for *nix: https://github.com/debrouxl/tilp_and_gfm/blob/master/tilp/trunk/build/scripts/install_tilp.sh

BioSig is a software library for processing of biomedical signals (EEG, ECG, etc.) with Matlab, Octave, C/C++ and Python. About 50 different data formats are supported.

BWA is a program for aligning sequencing reads against a large reference genome (e.g. human genome). It has two major components, one for read shorter than 150bp and the other for longer reads.

Icarus Verilog is an open source Verilog compiler that supports the IEEE-1364 Verilog HDL including IEEE1364-2005 plus extensions.

libdc1394 is a library that provides a high level programming interface for application developers who wish to control and capture streams from IEEE 1394 based cameras that conform to the 1394-based Digital Camera Specifications (also known as the IIDC or DCAM Specifications). libdc1394 also supports some USB cameras that are IIDC compliant. Besides capture and control, libdc1394 provides a full set of colour space conversion functions (including RAW decoding), vendor specific functions and direct camera register access. Keywords: ieee1394, IIDC, DCAM, firewire, USB, machine vision, computer vision, video capture, library

Elmer is a finite element software for numerical solution of partial differential equations and multiphysical problems. It includes models of structural mechanics, fluid dynamics, heat transfer, electromagnetics etc. Elmer home is www.csc.fi/elmer

Freemat is an interpreted, matrix-oriented development environment for engineering and scientific applications, similar to the commercial package MATLAB. Freemat provides visualization, image manipulation, and plotting as well as parallel programming.

Gpredict is a real-time satellite tracking and orbit prediction application. Gpredict can track an unlimited number of satellites and display the data in tables and various graphical view.

Viking is a free/open source program to manage GPS data. You can import, plot and create tracks, routes and waypoints, show OSM, Bing Aerial and other maps, geotag images, create routes using OSRM, see real-time GPS position (not in Windows), make maps using Mapnik (not in Windows), control items, etc. It is written in mostly in C (with some C++) & the GTK+3 toolkit. Viking is currently dual managed - with a corresponding Github presence at: https://github.com/viking-gps/viking Where you may find it easier to view the code and raise issues there too.

ATLAS (Automatically Tuned Linear Algebra Software) provides highly optimized Linear Algebra kernels for arbitrary cache-based architectures. ATLAS provides ANSI C and Fortran77 interfaces for the entire BLAS API, and a small portion of the LAPACK AP

GLPK 4.65 (GNU Linear Programming Kit, http://www.gnu.org/software/glpk/) is a solver for large-scale linear programming (LP), and mixed integer programming (MIP). This project supplies the most recent Windows executables - 2018-03-17. Linux and OSX users should download the source distribution from http://ftp.gnu.org/gnu/glpk

YAFU (with assistance from other free software) uses the most powerful modern algorithms (and implementations of them) to factor input integers in a completely automated way. The automation within YAFU is state-of-the-art, combining factorization algorithms in an intelligent and adaptive methodology that minimizes the time to find the factors of arbitrary input integers. Most algorithm implementations are multi-threaded, allowing YAFU to fully utilize multi- or many-core processors (including SNFS, GNFS, SIQS, and ECM). YAFU is primarily a command-line driven tool. You provide the number to factor and, via screen output and log files, YAFU will provide you the factors. There is also an interactive environment similar to MATLAB or PARI/GP, where you can type commands and store results. YAFU is very customizable, through the optional use of many many command line parameters and a very capable expression interpreter.

Amide's a Medical Image Data Examiner: Amide is a tool for viewing, registering, and analyzing anatomical and functional volumetric medical imaging data sets.

BRL-CAD is a powerful cross-platform constructive solid geometry solid modeling system that includes an interactive geometry editor, ray-tracing for rendering & geometric analyses, network distributed framebuffer support, image & signal-processing tools.

Florence is an extensible scalable on-screen virtual keyboard for GNOME that stays out of your way when not needed. You need it if you can't use a real keyboard either because of a handicap, broken keyboard or tablet PC but you can use a pointing devide.

Stellarium renders 3D photo-realistic skies in real time with OpenGL. It displays stars, constellations, planets, nebulae and others things like ground, landscape, atmosphere, etc.

An USB programmer for various devices, including PIC, dsPIC, AVR microcontrollers, and various kinds of serial eeproms

The Pure Data (short Pd) project on SourceForge unifies the extensions (or externals) written for the Pure Data Graphical Computer Music System written by Miller Puckette with contributions from many others.

Gabedit is a Graphical User Interface for FireFly (PC-Gamess), Gamess-US, Gaussian, Molcas, Molpro, MPQC, NWChem, OpenMopac, Orca, PSI4 and Q-Chem computational chemistry packages.

gputils is a collection of tools for Microchip PIC microcontrollers. Its goal is to be fully compatible with Microchip's tools, MPASM, MPLINK, and MPLIB.

A free cross-platform library of fast C++ routines for the plotting of up to 3-ranged data. It can export to bitmap and vector EPS/SVG files. There are window interfaces (GLUT/FLTK/Qt) and console tools. MathGL can be used from C/Fortran/Python/Octav/Lua

Libnodave is a library that provides the necessary functions to connect to and exchange data with Siemens S7 300/400 PLCs (200 family and S5 family now also supported). Can now also be used under Win32.