C Medical Software

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  • 1
    Gnaural

    Gnaural

    Entrain your brain!

    A programmable audio generator intended as an aural aid to meditation, implementing the binaural beat principle as described in Gerald Oster's Oct. 1973 Scientific American article "Auditory Beats in the Brain."
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    5.0 out of 5 stars 41 Reviews
    Downloads: 229 This Week
    Last Update:
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  • 2
    Biosignal Tools
    BioSig is a software library for processing of biomedical signals (EEG, ECG, etc.) with Matlab, Octave, C/C++ and Python. About 50 different data formats are supported.
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    4.8 out of 5 stars 17 Reviews
    Downloads: 201 This Week
    Last Update:
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  • 3
    Amide's a Medical Image Data Examiner: Amide is a tool for viewing, registering, and analyzing anatomical and functional volumetric medical imaging data sets.
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    4.6 out of 5 stars 5 Reviews
    Downloads: 174 This Week
    Last Update:
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  • 4

    MAGeCK

    Model-based Analysis of Genome-wide CRISPR-Cas9 Knockout

    MAGeCK2 is here: https://github.com/davidliwei/mageck2 Model-based Analysis of Genome-wide CRISPR-Cas9 Knockout (MAGeCK) is a computational tool to identify important genes from the recent genome-scale CRISPR-Cas9 knockout screens technology. For instructions and documentations, please refer to the wiki page. MAGeCK is developed by Wei Li and Han Xu from Dr. Xiaole Shirley Liu's lab at Dana-Farber Cancer Institute/Harvard School of Public Health, and is maintained by Wei Li lab at Children's National Medical Center. We thank the support from Claudia Adams Barr Program in Innovative Basic Cancer Research and NIH/NHGRI to develop MAGeCK.
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    Downloads: 171 This Week
    Last Update:
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    Paessler - Monitor Your Whole Network in Minutes

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  • 5
    TARIS (Tree Analysis and Representation of Isopotential Surfaces) is a software package designed for molecular similarity purposes in the field of Computational Chemistry. Users are allowed to compare molecules through their MEP loading .cube files.
    Downloads: 100 This Week
    Last Update:
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  • 6
    Monte Carlo eXtreme (MCX)

    Monte Carlo eXtreme (MCX)

    Physically accurate and validated GPU ray-tracer

    MCX is a GPU-accelerated, general-purpose, physically-accurate and feature-rich 3-D light transport simulator. It is one of the fastest simulators because it can use tens of thousands of GPU threads to simulate photons in parallel.
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    Downloads: 89 This Week
    Last Update:
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  • 7
    XMedCon

    XMedCon

    medical image conversion utility

    a medical image conversion utility & library; hereby hoping to lower at least one barrier in medical research projects.
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    5.0 out of 5 stars 2 Reviews
    Downloads: 18 This Week
    Last Update:
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  • 8
    Nifty Reg
    This project, initially developed at University College London, contains programs to perform rigid, affine and non-linear registration of nifti or analyse images. Two versions of the algorithms are included, a CPU- and a GPU- (using CUDA) based implementation.
    5.0 out of 5 stars 4 Reviews
    Downloads: 11 This Week
    Last Update:
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  • 9
    A Sequenced Binaural Wave Generator for Linux+Windows. May be used to generate sounds that entrain the brain's waves to oscillate at selected frequencies to aid in relaxation, lucid dreaming, meditation, clear thought, out-of-body experiences + more
    5.0 out of 5 stars 3 Reviews
    Downloads: 9 This Week
    Last Update:
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  • 10
    MRiLab

    MRiLab

    A Numerical MRI Simulation Platform

    The MRiLab project is moving to GitHub, the latest version can be obtained from https://leoliuf.github.io/MRiLab/ The MRiLab is a numerical MRI simulation package. It has been developed and optimized to simulate MR signal formation, k-space acquisition and MR image reconstruction. MRiLab provides several dedicated toolboxes to analyze RF pulse, design MR sequence, configure multiple transmitting and receiving coils, investigate magnetic field related properties and evaluate real-time imaging technique. The main MRiLab simulation platform combined with those toolboxes can be applied to customize various virtual MR experiments which can serve as a prior stage for prototyping and testing new MR technique and application. If you find MRiLab useful for your work, please cite this paper: Fast Realistic MRI Simulations Based on Generalized Multi-Pool Exchange Tissue Model. IEEE Transactions on Medical Imaging. 2016. doi: 10.1109/TMI.2016.2620961
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    5.0 out of 5 stars 2 Reviews
    Downloads: 10 This Week
    Last Update:
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  • 11

    OpenEEG - EEG hardware and software

    The OpenEEG project is about creating a low cost EEG device

    Working hardware has been built and is in a late beta stage. Software is also available.
    5.0 out of 5 stars 3 Reviews
    Downloads: 5 This Week
    Last Update:
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  • 12

    niftilib

    ** MAIN SITE IS NOW: https://github.com/NIFTI-Imaging/nifti_clib **

    niftilib is a collection of i/o routines for the nifti1 neuroimage data format. C (nifticlib), Java (niftijlib), Matlab (niftimatlib), and Python (pynifti) code is available. For nifti format info see: http://nifti.nimh.nih.gov/
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    Downloads: 16 This Week
    Last Update:
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  • 13
    NiftyRec
    This project, developed at UCL London, provides code for tomographic reconstruction. NiftyRec is written in C and has Python and Matlab extensions. Computationally intensive functions have a GPU accelerated version based on CUDA.
    5.0 out of 5 stars 3 Reviews
    Downloads: 3 This Week
    Last Update:
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  • 14
    SeaBreeze

    SeaBreeze

    Open-source cross-platform spectrometer device driver

    SeaBreeze is a device driver library that provides an interface to select Ocean Optics spectrometers. It is written in C/C++ and builds and runs on Windows (XP/7/8), MacOSX, and Linux (x86/x64/ARM).
    Downloads: 10 This Week
    Last Update:
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  • 15
    dsam
    The Development System for Auditory Modelling (DSAM) is a computational library designed specifically for producing simulations of the auditory system. It brings together many established auditory models within a flexible programming platform.
    Downloads: 8 This Week
    Last Update:
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  • 16
    OsiriX - moved to Github
    The project has moved to GitHub: https://github.com/pixmeo/osirix
    4.4 out of 5 stars 7 Reviews
    Downloads: 2 This Week
    Last Update:
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  • 17
    Orthanc

    Orthanc

    Lightweight, RESTful DICOM server for healthcare and medical research

    [2015-06-12] Orthanc has left SourceForge. All the downloads are now available directly from our official Website: http://www.orthanc-server.com/browse.php
    Downloads: 5 This Week
    Last Update:
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  • 18
    ECG Logger

    ECG Logger

    ECG Logger is a complete Holter system incl. device and firmware.

    NEW V3 version with RTC and buzzer (require V3+ ECG Logger Viewer application) The ECG Logger project is a Wearable Cardio Monitor for Long-Term (up to 24h) ECG Data Acquisition and Analysis (aka Holter) with an ECG live (real-time) mode. This project provides a very low-cost open-source "Hardware and Software" for a Cardiac Rhythmic Holter. The hardware has been made very simple and is based on an Arduino Nano micro-controller with boards for SD card mass-storage, instrumentation differential amplifier and RTC. It can help monitoring arrhythmia syndromes such as bradycardia, tachycardia, extra-systoles, pause or flutter. WARNING: In no case it can be use to replace a professional medical examination. Device MUST NOT BE CONNECTED to appliance powered by mains - risk of electrical shocks ************************************************************************************** see also: ECG Logger Viewer application : https://sourceforge.net/projects/ecg-logger-viewer/
    5.0 out of 5 stars 5 Reviews
    Downloads: 1 This Week
    Last Update:
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  • 19
    Nifty Sim
    Nifty Sim is a high-performance nonlinear finite element solver, developed at University College London. A key feature is the option of GPU-based execution, which allows the solver to significantly out-perform equivalent commercial packages.
    Downloads: 4 This Week
    Last Update:
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  • 20
    The Tomographic Image Reconstruction Interface of the Universite de Sherbrooke (TIRIUS) is a Qt-based user-interface software for reconstructing 3D images from data generated by real apparatus or generated by the GATE Monte Carlo simulator.
    5.0 out of 5 stars 1 Review
    Downloads: 2 This Week
    Last Update:
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  • 21
    medical image analysis

    medical image analysis

    Libraries and command line tools for medical image processing.

    This software provides libraries and command line tools for the processing and analysis of gray scale medical images.
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    5.0 out of 5 stars 1 Review
    Downloads: 2 This Week
    Last Update:
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  • 22
    GPU Edge Detector

    GPU Edge Detector

    GPU Interactive Program For Edge detection

    This is a standalone, all in one Edge Detector that is mainly running on GPU using the CUDA technology. Each algorithm also has an OpenCV counterpart which is the closest one in terms of speed. This project is partly based on the Sobel Filter sample available as part of the CUDA SDK. This project also partly uses the OpenCV library to load different types of image. This program includes: Prewitt filter, Roberts Cross, Canny edge detector and finally Sobel filter with the ability to modify some variables such as sigma in Canny and see the result in real-time. To access and download the code, please review the code section. (The code section is currently close until our article gets published) Commiting publicly to the project is currently closed but feel free to email us. The source code is dependant on CUDA 5.0 Samples now available as part of the CUDA Toolkit. "This software contains source code provided by NVIDIA Corporation."
    Downloads: 3 This Week
    Last Update:
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  • 23
    The Open Source Health Information Platform is a Python implementation of openEHR electronic health record specifications http://www.openehr.org. Project website : http://launchpad.net/oship Analytics are at: http://www.ohloh.net/projects/oship
    Downloads: 3 This Week
    Last Update:
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  • 24
    OpenCMISS-Zinc

    OpenCMISS-Zinc

    A Library for Interactive Modelling and Visualisation

    The OpenCMISS-Zinc Library (opencmiss.org/zinc), or Zinc, is a software library for building interactive graphical modelling and visualisation applications. Models are represented in Zinc as mathematical fields defined over domains, including finite elements with support for high-order basis functions, complex parameter mappings and time variation, and image-based fields. Further fields can be defined by mathematical expressions and algorithms on existing fields, including image processing filters. Zinc model data structures are dynamic, supporting interactive applications which programmatically create, destroy and modify parts of models.
    Downloads: 3 This Week
    Last Update:
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  • 25
    SimPET

    SimPET

    A web platform for the MC simulation of realistic brain PET data

    SimPET (http://www.sim-pet.org) is an open, efficient, and user‐friendly online platform for the generation of synthetic brain PET datasets. The platform offers the ability to generate realistic activity and attenuation maps from patient's PET/CT and MRI images. These maps can then be simulated, and sinograms and simulated images can be downloaded. More advanced features can be obtained by using the SimPET scripts: https://github.com/txusser/brainviset_simset https://github.com/txusser/simpet (New version pre-alpha) You can also upload your own phantoms to simulate. Currently the platform incorporates MC models for the GE Advance, GE Discovery ST and Siemens mCT. More models are on the way. You can also access all the previously simulated datasets from the dev team to test your quantification pipeline (Files section in this page). This project is an open collaboration between IDIS (www.idisantiago.es), Qubiotech (www.qubiotech.es), and FGUMA (www.fguma.es).
    Downloads: 3 This Week
    Last Update:
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