Model-based Analysis of Genome-wide CRISPR-Cas9 Knockout

43 Downloads (This Week)
Last Update:
Download mageck-0.5.6.tar.gz
Browse All Files



Model-based Analysis of Genome-wide CRISPR-Cas9 Knockout (MAGeCK) is a computational tool to identify important genes from the recent genome-scale CRISPR-Cas9 knockout screens technology.

For instructions and documentations, please refer to the wiki page.

MAGeCK is developed and maintained by Wei Li and Han Xu from Dr. Xiaole Shirley Liu's lab at Department of Biostatistics and Computational Biology, Dana-Farber Cancer Institute and Harvard School of Public Health. We thank the support from Claudia Adams Barr Program in Innovative Basic Cancer Research to develop MAGeCK.

MAGeCK Web Site


  • Simple, easy to use pipeline to screen genes in Genome-wide CRISPR-Cas9 Knockout experiments
  • High sensitivity and low false discovery rate
  • Fully utilize the screening data by performing both positive and negative screening in one dataset
  • Provide statistical evaluation in genes, sgRNAs and pathways
  • Require as few as 2 samples
  • Identify cell-type specific targets
  • A set of visualization features that generate publication standard figures


Other Useful Business Software

The Sight of Sound Icon

­ Improve VoIP Visibility from SIP to RTP

The Sight of Sound Icon
Cloud­based voice solutions are common in enterprise networks and frustrating for operations teams to manage. Simplify VoIP monitoring by having a proactive analysis of on-prem, hybrid and UCaaS voice services. Try the ThousandEyes VoIP monitoring solution today, free.

Additional Project Details

Intended Audience


Programming Language

Python, C



Thanks for helping keep SourceForge clean.

Screenshot instructions:
Red Hat Linux   Ubuntu

Click URL instructions:
Right-click on ad, choose "Copy Link", then paste here →
(This may not be possible with some types of ads)

More information about our ad policies

Briefly describe the problem (required):

Upload screenshot of ad (required):
Select a file, or drag & drop file here.

Please provide the ad click URL, if possible:

Get latest updates about Open Source Projects, Conferences and News.

Sign up for the SourceForge newsletter:

JavaScript is required for this form.

No, thanks