Search Results for "research" - Page 65
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Showing 2809 open source projects for "research"
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The Python Unified Membrane Analysis Toolkit is a suite of python tools for analyzing molecular dynamics simulations of membranes.
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py-collectd-csv
A python module and scripts for fetching specific CollectD CSV data.
CollectD-CSV is a small project providing utilities for analyzing CollectD CSV data locally. CollectD_CSV module provides functions for fetching data with a specified time interval and regular expressions matching the end of the path without the datestamp. The fetched data can be saved into files or returned as a list. fetchCSV.py script can be used to fetch the data matching the given parameters and save to files in a specified directory. monitorCSV.py script calculates the minimum,... -
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pyirrlicht
Access to Irrlicht Engine SDK from assembler, C, Python, Basic, Pascal
Python ctypes module for the Irrlicht Engine SDK for 2d/3d games and graphics. Compatibility with all Python versions, wich support ctypes module. Second internal project is SWIG wrapper. Additional support for SVG files over AGG or Cairo library. Also irrlicht_c library give access to Irrlicht functional from other programming languages: ASM (FASM), C (TinyC), Basic (FreeBASIC, thinBasic, OxygenBasic), Pascal, Gentee, AutoIt and game frameworks like GameMaker or Blitz. -
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The sandbox libraries (libsandbox & pysandbox) are an open-source suite of software components for C/C++ and Python developers to create automated profiling tools and watchdog programs. The API's are designed for executing and instrumenting simple (single process) tasks, featuring policy-based behavioral auditing, resource quota, and statistics collecting. The sandbox libraries were originally designed and utilized as the core security module of a full-fledged online judge system for...
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eemod_dnsmod
A detailed nitrogen model inside of a simple ecological model
This is an simple ecological model for lakes and reservoirs that contains a very detailed description of the most relevant nitrogen processes. The model is not very complete, but the main intention is to develop a library to be coupled with other models and use the full-mixed model as a testing version. A lot of things can be improved. I will read all the suggestions but I cannot promise that I will include all of them. Every new part of the code will contain the name of the author. If... -
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is a interactive molecular visualisation program designed especially designed for coarse-grained simulation of non-spherical particles. Ellipsoids (Gay-Berne), disks, and custom shaped uniaxial particle (e.g. pear-shaped particles) can be represented.
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ReadWrapper is a Python toolset to prepare and package raw sequencing data ("reads") for submission to the Sequence Read Archive (SRA, http://trace.ncbi.nlm.nih.gov/Traces/sra/).
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The sigrok project aims at creating a portable, cross-platform, Free/Libre/Open-Source signal analysis software suite that supports various device types, such as logic analyzers, MSOs, oscilloscopes, multimeters, LCR meters, sound level meters, thermometers, anemometers, light meters, dataloggers, function generators, power supplies, GPIB interfaces, and more.
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SiMTraM
"SiMTraM" Simulation of Mixed Traffic Mobility
"SiMTraM" Simulation of Mixed Traffic Mobility is an extension of SUMO (A Traffic Simulator Developed by DLR, Germany) for Heterogeneous traffic. This software is developed by Transportation Lab, IIT Bombay. SiMTraM supports the heterogeneous traffic behaviour often found at developing countries such as India, China and in most of the part of Asia and Middle East continent. SiMTraM also supports the homogeneous traffic found at other part of the world. -
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Neural Diversity Machines
A Hybrid Neural Network that implements a diverse transfer functions
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Black Spot Leaf Area Calculator
Automated leaf area estimation from scanned leaf images
Black Spot is a free stand alone software and method to estimate leaf area from images of leaves captured using standard flatbed scanners. This easy to use software allows the user to batch process a large number of samples from multiple species with minimal user input. -
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Open-source weather database system for storage of weather/water observations, forecasts, analysis fields, and hindcasts. includes loading program for GRIB files. Visit project website (http://wdb.met.no) for further information. Please note: this project has now moved to http://wdb.met.no
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w3af, is a Web Application Attack and Audit Framework. The w3af core and it's plugins are fully written in python. The project has more than 130 plugins, which check for SQL injection, cross site scripting (xss), local and remote file inclusion and much more. This project has been migrated to github! See details in our project site: http://w3af.org/
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AMBIENT
Find active modules in metabolic networks using high-throughput data
IMPORTANT: Since publication of the AMBIENT method in BMC Sys Bio, several updates have been made. If you wish to use the version used in the paper it is v0.6.3, however I recommend using the latest version which works in the same way but with additional options and has stability and performance improvements. Thanks for your interest! AMBIENT (Active Modules for Bipartite Networks) is a Python module that uses simulated annealing to find areas of a metabolic network (modules) that have... -
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feinerleiser
Feinerleiser implements cite rules from the humanities for jabref
Feinerleiser (speak finalizer) takes an odt file that has citations inserted by jabref and expands them according to rules set by the user in an xml file. Contrary to the style of citation used in engineering, psychology or medicine [Doe 1985; 123] the user can create complex citation-styles, that satisfy the needs and expectations of researchers from the field of humanities. Features Include Ibidem-Cite, full citation on first cite and others. It also supports sorting and selective... -
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Dvipdfm tool for SCons
SCons tool to cooperate with dvipdfm program
SCons is a make replacement providing a range of enhanced features such as automated dependency generation and built in compilation cache support. SCons rule sets are Python scripts so as well as the features it provides itself SCons allows you to use the full power of Python to control compilation. This is a SCons extension (tool) which enables usage of the dvipdfm program to convert dvi files to pdf. -
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GS junior Webserver
GS junior Webserver
GS junior Webserver is a web based file server to easily access sequencing data of -
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A set of very optimized tools for indexing/querying huge genomes/files. Provided so far: a very fast exact mapper, and an unconstrained split-mapper
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GarlicSim is an ambitious open-source project that attempts to redefine the way that people think about computer simulations, making a new standard for how simulations are used. It is not hosted on SourceForge; Visit http://garlicsim.org to get it.
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Cyberbit
Visual Cryptography and Bit-Plane Complexity Segmentation in Python
Hide secret messages in your pictures! Cyberbit lets you transmit a secret message to an intended person in a new manner. The secret message is an 1-bit deep black & white image. The message can contain written text, a drawing, a secret code etc. Using Visual Cryptography the application splits the secret message into two "shadow images" called <<shares>>. Any of the two shares will be embedded into a "normal" image file called by tradition <<vessel>>. You can use a method of hand to... -
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PyMbs has moved to Bitbucket: https://bitbucket.org/pymbs/pymbs PyMbs is a Python library for modelling holonomic multibody systems. It is able to generate simulation code for Python, Modelica and Matlab.
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pyTRAX
ODEs solver with GUI
This small program named TRAX is capable of solving systems of ordinary differential equations and plotting the solution on a phase plane as well as function of time. The program is intended for educational purposes. The program runs on any Python-enabled platform, including GNU/Linux and MS\Windows OSs. To run the program you will need a python interpreter ver. 2.x and compatible versions of numpy, scipy and matplotlib libraries. See screenshot for usage reference. -
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dAnalytics
dAnalytics is a software made for education in discriminant analysis.
dAnalytics is a software made for educational purposes to work with discriminant analysis. It's a very simple calculator over bi-dimensional populations. You input a file with two columns (one for each variable) and tryout different separations of populations (blue and red) and analyze it's efficiency by observing the eigen value result for the attempted separation. It also gives many information about the statistics both of the input and the separated populations. There's a documentation... -
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HPeak
A HMM-based algorithm for defining enriched regions from ChIP-seq data
HPeak is a hidden Markov model-based approach that can accurately pinpoint regions to where significantly more sequence reads map. Testing on real data shows that these regions are indeed highly enriched by the right protein binding sites. Command (single-end): perl /compbio/software/HPeak3/HPeak.pl -sp HUMAN/MOUSE -format BED -t TREATMENT.inp -c CONTROL.inp -n OUTPUTPREFIX -fmin 100 -fmax 300 -r 36 -ann -wig -seq -interfiles Command (pair-end): perl /compbio/software/HPeak3/HPeak.pl...
