ScreenSifter

ScreenSifter can help you in managing all your RNAi screens related projects in organized fashion. ScreenSifter, to perform the sequential, user friendly, guided, and advanced statistical analyses of RNAi screening results. User can upload their raw signal intensities and will avail complete quality control of screen, hit selection, plotting of hit genes with gene ontology, comparing of replicates or comparing of channels. In addition, ScreenSifter has visualization tools to plot specific genes or gene groups in the screen data. ScreenSifter also provides Gene Set Enrichment Analysis (GSEA), protein-protein interaction directly on the plot.

Publication:
ScreenSifter: analysis and visualization of RNAi screening data
Pankaj Kumar, Germaine Goh, Sarawut Wongphayak, Dimitri Moreau and Frédéric Bard

BMC Bioinformatics. 2013 Oct 3;14(1):290.
http://www.biomedcentral.com/1471-2105/14/290/abstract

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License

Affero GNU Public License, Creative Commons Attribution Non-Commercial License V2.0

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Additional Project Details

Operating Systems

Cygwin, Fink

Intended Audience

End Users/Desktop, Healthcare Industry, Science/Research

User Interface

wxWidgets

Programming Language

Python

Database Environment

SQLite

Related Categories

Python Bio-Informatics Software

Registered

2012-09-24

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