Cerulean Hybrid Genome Assembler v0.1

Cerulean extends contigs assembled using short read datasets like Illumina paired-end reads using long reads like PacBio RS long reads.

Cerulean v0.1 has been implemented with bacterial genomes in mind. I am not able to maintain and update the software due to change in research funding. However I will be happy to answer any queries or provide support and comments if you are interested in extending this algorithm.

The method is fully described in Deshpande, V., Fung, E. D., Pham, S., & Bafna, V. (2013). Cerulean: A hybrid assembly using high throughput short and long reads. arXiv preprint arXiv:1307.7933.
http://arxiv.org/abs/1307.7933

Project Activity

See All Activity >

License

Other License

Follow Cerulean: Hybrid Genome Assembler

Cerulean: Hybrid Genome Assembler Web Site

Other Useful Business Software
$300 Free Credits for Your Google Cloud Projects Icon
$300 Free Credits for Your Google Cloud Projects

Start building on Google Cloud with $300 in free credits. No commitment, no credit card required until you're ready to scale.

Launch your next project with $300 in free Google Cloud credits—no strings attached. Test, build, and deploy without risk. Use your credits across the entire Google Cloud platform to find what works best for your needs. After your credits are used, continue with always-free tier services. Only pay when you're ready to scale. Sign up in minutes and start exploring.
Start Free Trial
Rate This Project
Login To Rate This Project

User Reviews

Be the first to post a review of Cerulean: Hybrid Genome Assembler!

Additional Project Details

Operating Systems

BSD, Linux

Intended Audience

Education, Engineering, Healthcare Industry, Information Technology, Science/Research

User Interface

Command-line

Programming Language

Python

Registered

2013-08-05
Report inappropriate content