Search Results for "research" - Page 53
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Showing 2867 open source projects for "research"
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lxnstack
A program to align and stack astronomical images.
Lxnstack is a program designed to align and stack astronomical images (both planetary and deep-sky). The features of latest version are: * Several stacking methods (average, median, sigma-clipping, ...) * Two automatic align method: align-points; phase correlation, * One manual align method. * sub-pixel precision (0.1 pixel for phase correlation and 0.01 pixel for manual alignment). * Automatic image derotation. * FITS file support (by installing the python2 package... -
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ProtPOS
Prediction of PROTtein Preferred Orientation on a Surface
ProtPOS is a self-contained, lightweight, and easy-to-use software package for predicting the preferred orientation of protein on a given surface upon initial adsorption. It searches quickly for the low energy protein poses in all translational and rotational degrees of freedom of the protein with respect to the surface using particle swarm optimization. Each successful run returns the lowest energy orientation of the protein on the surface in PDB format, which is readily used for MD... -
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Py3DN
Morphometric analysis and visualization of the 3D structure of neurons
Py3DN, is an open-source solution providing innovative tools to analyze 3D data collected with the widely used commercial system Neurolucida (MBF). It allows the construction of mathematical representations of neuronal topology, visualization and a variety of morphometric analysis on the neuronal structures. Above all, it provides a flexible environment where new types of analyses can be easily set up allowing total freedom to test new hypotheses. The application was developed in Python and... -
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Python library to perform electronic structure calculations with tight binding models in different types of lattices and different dimensionalities. It allows to include different terms in the Hamiltonian as sublattice, exchange field or magnetic field. Provides functions to calculate different Green functions, band structure, density of states, transport using Landauer formula, topological invariants, etc.
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Copy Number Analysis for Targeted Resequencing (CONTRA) is a tool for copy number variation (CNV) detection for targeted resequencing data such as those from whole-exome capture data.
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QAL
Query Abstraction Layer
Project has moved to: https://github.com/OptimalBPM/qal QAL is a collection of libraries for mining, transforming and writing data from and to a number of places. Sources and destinations include different SQL and NoSQL backends, file formats like .csv, XML and excel. Even untidy HTML web pages. It has a database abstraction layer that supports connectivity to Postgres, MySQL, DB2, Oracle, MS SQL server. JSON and MongoDB is coming. It uses XML/JSON formats(self-generated SQL... -
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Theodore is a tool for semi-automated hybrid assembly of genomes, improving assembly quality by combining multiple information sources.
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Brainstorm Network
Software to organize a brainstorm as a complex network.
This project aims to organize a brainstorm or a bibliographic revision in a network (graph). With this organization the users are able to visualize the main points of the brainstorm (the hubs in the network). Moreover, they can access the information through the rede, interactively, clicking on the edges or nodes! All information is associated with a reference list (imported from a bibtex file). This project uses Python, Web2py, MariaDB and VIS.js (D3.js). -
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EggLib
Evolutionary Genetics and Genomics Library
EggLib has moved to http://mycor.nancy.inra.fr/egglib/ since version 3.0.0. -
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Software for speech research. It includes programs and libraries for signal processing, along with general purpose scientific libraries. Most of the code is in Python, with C/C++ supporting code. Also, contains code releases corresponding to publishe
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The Modular toolkit for Data Processing (MDP) is a Python data processing framework. From the user's perspective, MDP is a collection of supervised and unsupervised learning algorithms and other data processing units that can be combined into data processing sequences and more complex feed-forward network architectures. From the scientific developer's perspective, MDP is a modular framework, which can easily be expanded. The implementation of new algorithms is easy and intuitive. The...
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Moose
Multiscale Neuroscience and Systems Biology Simulator
Moose is the core of a modern software platform for the simulation of neural systems ranging from subcellular components and biochemical reactions to complex models of single neurons, large networks, and systems-level processes. We have moved Github.com. This should be your source for the latest version of the code. -
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memP is a parallel heap profiling library based on the mpiP MPI profiling tool. The intent of memP is to identify the heap allocation that causes a task to reach its memory in use high water mark for each task in a parallel job.
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Part-of-speech tagging is the task of assigning symbols from a particular set to words in a natural language text. ACOPOST implements and extends well-known machine learning techniques and provides a uniform environment for testing.
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HTSeq
Analysing high-throughput sequencing data with Python
This SourceForge page is outdated! HTSeq has been moved to github: https://github.com/simon-anders/htseq General information and documentation on HTSeq; http://www-huber.embl.de/users/anders/HTSeq -
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Klonwerk
advanced variability management tool
Klonwerk is an advanced and easy-to-use tool for reactive variability management and large-scale software reuse. It allows you to automatically clone and modify directories of textural or binary files (e.g. code, architecture, documentation), based on conceptual feature/decision models. -
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ffnet is a fast and easy-to-use feed-forward neural network training solution for python. Many nice features are implemented: arbitrary network connectivity, automatic data normalization, very efficient training tools, network export to fortran code. Now ffnet has also a GUI called ffnetui.
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Yet Another Audio Feature Extractor is a toolbox for audio analysis. Easy to use and efficient at extracting a large number of audio features simultaneously. WAV and MP3 files supported, or embedding in C++, Python or Matlab applications.
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Cryptography Tools
Classic & Modern Cryptography tools
Cryptography Tools is a project to develop demonstration tools on classic (currently Caesar and Playfair) & modern crypto-systems, including private & public key encryptions, digital signatures, cryptographic hashes and authenticated encryption. -
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COFILOS
A Development Framework for Coldfire
Contains a framework for Coldfire MCUs like 52254. The framework supports a Command Line Interface (CLI) that may work from Serial port, USB or ENET. The framework uses Processor Expert and IDE requirement is MCU Eclipse 10.4 from Freescale. Includes the FunkOS Realtime Operating System by Funkenstein Software Consulting, available at http://funkos.sourceforge.net Mainly it is a support package for the development board Perseus, but I have ported also the RTOS to MCF52233DEMO... -
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PyML is an interactive object oriented framework for machine learning written in python. PyML focuses on kernel classifiers, providing tools for feature selection, model selection, and methods for assessing classifier performance.
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pyMDMix
Molecular dynamics with aqueous-organic solvent mixtures
This python package aims to help people set up and analyze molecular dynamics simulations in aqueous-organic solvent mixtures. See D. Alvarez-Garcia et al. Journal of Medicinal Chemistry, 2014. -
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Bifrozt
High interaction honeypot solution for Linux based systems
NOTICE: The format of this project has been changed from ISO to using ansible and has been moved to GitHub. Github link: https://github.com/Bifrozt/bifrozt-ansible
