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Py3DN

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Morphometric analysis and visualization of the 3D structure of neurons

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Description

Py3DN, is an open-source solution providing innovative tools to analyze 3D data collected with the widely used commercial system Neurolucida (MBF). It allows the construction of mathematical representations of neuronal topology, visualization and a variety of morphometric analysis on the neuronal structures. Above all, it provides a flexible environment where new types of analyses can be easily set up allowing total freedom to test new hypotheses. The application was developed in Python and uses Blender (an open source program) to produce detailed 3D representations of raw and processed data.
Py3DN is described in the paper:
Aguiar P et al, "Versatile morphometric analysis and visualization of the three-dimensional structure of neurons", Neuroinformatics, 2013, 11(4):393-403
doi: 10.1007/s12021-013-9188-z

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  • 1 of 5 2 of 5 3 of 5 4 of 5 5 of 5

    Very useful. Thanks.

    Posted 06/08/2013
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Additional Project Details

Intended Audience

Science/Research

Programming Language

Python

Registered

2012-09-09

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