Search Results for "contra-cnv"
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Showing 79 open source projects for "contra-cnv"
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hg38 version of the pipelines for whole exome sequencing: exome_test38.sh wole transcription sequencing: rna_test38.sh somatic calling: somatic38.sh SV detect: svdetect38.sh, meerkat38.sh cnv: svdetectcnv38.sh, contra38.sh, cnvkit38.sh *** Mutect2 instead of haptotypecaller is used to call variants in DNA-seq.
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Excel to Tally
Tool to export Excel data to Tally
Exports all types of Vouchers and other data to Tally. -
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Warp VPN GUI
GUI para Warp VPN de Cloudflare
Deja de usar la terminal para algo tan cotidiano como usar una VPN. Esta VPN, proveída por Cloudflare, es gratuita e incluye funciones como protección contra malware y contenido de escaso valor moral. Instalación Mediante Swiftinstall Descarga el paquete .deb Abre Swiftinstall y selecciona el paquete Pulsa en Instalar. Mediante dpkg Ejecuta dpkg -i warp-exec-v1.deb Requisitos Tener instalada Warp VPN -> https://pkg.cloudflareclient.com/#debian Haber activado Warp -> https://developers.cloudflare.com/warp-client/get-started/linux/ -
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CPingPong
Juego de ping pong
Un juego clásico basado en un antiguo juego donde uno controla una raqueta que no permite que la pelota se vaya fuera de la pantalla. Tiene el clásico estilo de consola recordando los antiguos juegos que se ejecutaban sobre esta. -
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GENET-CNV
Integrated DNA copy number variation and gene expression analysis
The Boolean implication networks outperformed Bayesian networks, Pearson’s correlation networks, and other Boolean networks in constructing genome-scale co-expression networks evaluated with comprehensive biological pathways and Gene Ontology in MSigDB. References: Guo NL, Wan YW. Pathway-based identification of a smoking associated 6-gene signature predictive of lung cancer risk and survival. Artificial Intelligence in Medicine 2012 Jun;55(2):97-105. Ye Q, Singh S, Qian PR, Guo... -
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cifrasyletras
Juego de reflexión aplicando vocabulario y aritmética .
...La parte aritmética consiste en calcular un número de 3 dígitos usando 6 dígitos distribuidos aleatoriamente por el ordenador y usando operaciones aritméticas elementales + - x / La parte de vocabulario consiste en encontrar la palabra más larga usando 9 letras consonantes y vocales. El juego se juega de la siguiente manera: se juegan los números y el doble de las letras y así sucesivamente en un total de ocho ciclos. Podemos jugar contra el ordenador o contra el jugador. Si juegas contra un jugador, cada uno se turnará con los mismos números y letras. Por esta razón, cuando un jugador juega el otro jugador está esperando su turno sin tratar de encontrar la respuesta para no hacer trampa Haciendo clic en el botón de solución podemos ver todos los resultados encontrados por el ordenador. -
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A program for CNV detection with whole-genome low-coverage sequencing data. md5 of Increment_Ratio_of_Coverage_V2.0.tar.gz: c8dda5fbd5b43527538f5c410a303a74
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contra.sh is a shell script to run contra-cnv mode. In addition to the original outputs of SVDetect, the script also outputs and bed.graph and an adjusted bed.graph with baseline adjusted to the average Log2Ratio of a certain chromosome or all chromosomes, and a sorted density file.
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CAI[N]
Chromosomal Aberration Identifier [Numerical]
CAI[N] is a novel computational tool for CNV-karyotyping based on low coverage whole genome sequencing that uses in silico-generated normal karyotypes as a reference to calculate numerical chromosomal aberrations in fixed genomic windows in experimental samples. -
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svdetectcnv.sh
shell script to run SVDetect with baseline adjustment
svdetectcnv.sh is a shell script to run SVDetect CNV mode. In addition to the original outputs of SVDetect, the script also outputs an adjusted bed.graph with baseline adjusted to the average Log2Ratio of a certain chromosome or all chromosomes, and a sorted density file. **Update*** New version uses the splitted bam produced by exome_test.sh and allows for multithreading to split bam. -
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2048 Game Professional for Windows
Most elegant 2048 puzzle with game fields 4x4 8x8 16x16 for Windows
...La mayoría de los galardonados juegos profesionales de 2048 creados para Windows. El juego de código abierto 2048 incluye campos de juego 4x4, 8x8, 16x16 con ahorro automático del juego, protección contra el engaño y protección contra Boss, esquemas de dos colores y más. El programa te permite hacer crecer tu propio gatito a un gato pokemon maduro y competir con tus amigos. Formerly known as '2048 Game Girls Choice With Kitties'. Happy new year 2020! -
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ParseCNV CNV call association software takes CNV calls as input and creates SNP based statistics for CNV occurrence in population study cases and controls then calls CNVRs based on neighboring SNPs of similar significance.
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CELLX
Integrates expression, CNV, mutation, compound, and meta data.
CELLX is an informatics infrastructure to manage multi-dimensional genomics datasets containing expression, copy number variation, mutation, and compound sensitivity information. A browser based web page enables an accessible way to visualize, analyze, and download the database data in a pre-formatted table suitable for offline computation. CELLX is presently focused on supporting oncology precision medicine through the evaluation of preconceived hypotheses as well as unbiased, data... -
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GENSENG
GENSENG is a software detecting CNVs from NGS data
GENSENG is a software detecting CNVs(Copy Number Variations) from NGS(Next Generation Sequencing) data. We have uploaded the data preparation codes. Please download it from Files folder. -
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XCAVATOR
A tool for the detection of CNV/CNA from whole-genome sequencing data.
XCAVATOR is a novel software package for the identification of genomic regions involved in copy number variants/alterations (CNVs/CNAs) from short and long reads whole-genome sequencing experiments. XCAVATOR has been published on BMC Genomics (https://bmcgenomics.biomedcentral.com/articles/10.1186/s12864-017-4137-0). -
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Usb Data Saver
Respaldos automáticos de tu unidad usb, recuperación de archivos
...El proposito de este proyecto es ayudar a cualquier persona que maneje archivos importantes en su unidad flash para que no los pierda en caso de que su unidad se pierda,dañe o incluso contra robo.... Sabemos que el estar creando copias manualmente de tus archivos mas importantes puede llegar a ser algo tedioso.... ¿Cómo funciona? Usb data saver puede iniciarse con windows y revisar los archivos en tu unidad cada cierto periodo de tiempo segun lo definas Usb Data saver llevara la cuenta de cuales archivos son modificados,eliminados y cuales son nuevos de modo que siempre tengas una copia fresca de tus archivos sin mucho (mas bien nada) de esfuerzo. -
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Raiola Manda Y No El Panda
Juego en que Raiola Manda a un grupo de Pandas - AutoUploader
Juego en que Raiola deberá enfrentarse contra un grupo de pandas para ver quien manda, para ello podrá atacar a los osos pandas y así adquirir score que lo mantendrá en la cima de la tabla de posiciones. Juego Raiola Manda y No El Panda por Rodrhigo de AutoUploader -
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Increment_Ratio_of_Coverage
Method for CNV detection
A program for CNV detection with whole-genome low-coverage sequencing data. -
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karkinos
Tumor genotyper for Exome sequence that detects SNV,CNV, aTumor purity
karkinos is tumor genotyper which detects single nucleotide variation (SNV), integer copy number variation (CNV) and calculates tumor cellularity from tumor-normal paired sequencing data. Accurate CNV calling is achieved using continuous wavelet analysis and multi-state HMM, while SNV call is adjusted by tumor cellularity and filtered by heuristic filtering algorithm and Fisher Test. Also, Noise calls in low depth region are removed using EM algorithm. -
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Copy Number Analysis for Targeted Resequencing (CONTRA) is a tool for copy number variation (CNV) detection for targeted resequencing data such as those from whole-exome capture data.
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ASGENSENG
A software to detect allele specific CNV from both WGS and WES data.
Please go to Files tab and download both the software and the InHouseScripts for data preparation. The tutorial.pptx provides the tutorial of using this software. -
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Solo Contra La Oscuridad
Aventura Grafica
Aventura Grafica basada en los Mitos de Cthulhu, creada en Unity3d -
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