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Showing 140 open source projects for "generation"
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fwknop
Single Packet Authorization, Port Knocking
fwknop stands for the "FireWall KNock OPerator", and implements an authorization scheme called Single Packet Authorization (SPA). This method of authorization is based around a default-drop packet filter (fwknop supports iptables and firewalld on Linux, ipfw on FreeBSD and Mac OS X, and PF on OpenBSD) and libpcap. SPA is essentially next-generation port knocking (more on this below). The design decisions that guide the development of fwknop can be found in the blog post "Single Packet... -
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PerlPP
Perl preprocessor - embed Perl source in any file
Translates Text+Perl to Text. It can be used for any kind of text templating, e.g. code generation. No external modules are required, just a single file. Requires Perl 5.10.1+. PerlPP runs in two passes: it generates a Perl script from your input, and then it runs the generated script. If you see error at (eval ##) (for some number ##), it means there was an error in the generated script. The -D switch defines elements of %D. If you do not specify a value, the value true (a constant... -
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The Sashimi project hosts the Trans-Proteomic Pipeline (TPP), a mature suite of tools for mass-spec (MS, MS/MS) based proteomics: statistical validation, quantitation, visualization, and converters from raw MS data to the open mzML/mzXML formats.
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Netdeep Secure Firewall
Next Generation Open Source Firewall
Netdeep Secure is a Linux distribution with focus on network security. Is a Next Generation Open Source Firewall, which provides virtually all perimeter security features that your company may need. It offers Web content filters, ensuring better performance of the network, allowing users to use the service efficiently and securely, providing a deep control of the use of the Web access service, blocking access to unwanted websites, Virus, Spam, Applications and intrusion attempts. Its... -
Enable access to virtual apps and desktops without device or browser restrictions.Parallels® RAS (remote application server) is a flexible virtual application and desktop delivery solution that empowers organizations of all sizes to work securely from anywhere, on any device.
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Foswiki is an Enterprise wiki, typically used to run a collaboration platform, knowledge base or document management system. Users can create wiki applications using the Topic Markup Language, and developers can extend its functionality with plugins. Foswiki stands for "Free and Open Source" wiki to emphasize its commitment to Open Source software.
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HWUT - The Hello-Worldler's Unit Test
Software Unit Tests (Language Independent Approach)
Automation of Unit and System Tests. Tests can be implemented in any language and on many platforms. The flexible approach enables the inclusion of many types of tests, such as memory leak checks (using valgrind), coding rule checks, complexity checks, etc. Tests are run by a simple call to hwut in a base directory of a project. In particular for C, HWUT supports make file generation using 'sos' and 'sols' modes. Remote control-able function stubs may be generated using the 'stub' mode... -
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Acrux
Southern crucis constellation for your applications
This is CTK library of the next generation -
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App::Cetus
App::Cetus (Cetus) is a simple system information dashboard
App::Cetus (Cetus) is a simple system information dashboard for remotely monitoring your physical or virtual Linux servers. This project is a next generation of the VISD project -
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FullSSR
SSR detection and primer designing software
Traditional methods for isolation of microsatellites (SSRs) are often expensive and time consuming. Nowadays is easier and cheaper to obtain genomic data from next generation sequencing. Then, at least two software need to be applied in order to obtain SSR primers of SSR flanking sequences for PCR assays. Here we propose new software that allows the user to work with several sequences for PCR primer design in one step. -
Pimberly PIM - the leading enterprise Product Information Management platform.Drive amazing product experiences with quality product data.
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DBFeeder
Highly Customizable Test Data Generator
DBFeeder is a great tool to generate synthetic testdata for Oracle Databases and it is ideal for companies who wants to outsource development. Thanks to his original approach, data can be highly customizable and it even fits primary and foreign keys constraints of tables. -
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Design PCR primers from DNA sequence. Widely used (190k Google hits for "primer3"). From mispriming libraries to sequence quality data to the generation of internal oligos, primer3 does it. C&perl. Developers/testers/documenters needed.
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miRDP2
Accurately and fast analyzing microRNAs transcriptome in plants
miRDeep-P2 (miRDP2) is developed to accurately and fast analyze microRNAs (miRNAs) transcriptome in plants. It is adopted from miRDeep-P (miRDP) with new strategies and overhauled algorithm. We have tested miRDP2 to analyze miRNA transcriptomes in such plants with gradually increased genome size as Arabidopsis, rice, tomato, maize and wheat. Compared with miRDeep-P and several other computational tools, miRDP2 processed NGS data with superior speed. By incorporating newly updated plant miRNA... -
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RADPhE
Rapid Application Development PHP Hosting Environment
A Rapid PHP Application Development Environment designed for webmasters, developers, and hosts to enforce website uniformity, hardening, and light weight enough to function within shared hosting, in the presence of other scripts, and nested within itself. -
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MitoSAlt
Identification of mitochondrial structural alterations
MitoSAlt is a pipeline to identify large deletions and duplications in human and mouse mitochondrial genomes from next generation whole genome/exome sequencing data. The pipeline is capable of analyzing any circular genome in principle, as long as a proper configuration file is provided. -
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Integrator
Integrates proteomic searches from multiple search engines
Perl program that integrates proteomic searches from multiple search engines, and outputs LymPHOS2 input proteomic data file. For more information, you can have a look at the README.md file in the source code tree: https://sourceforge.net/p/lp-csic-uab/integrator/code/ci/default/tree/README.md - Gallardo, Ó., Ovelleiro, D., Gay, M., Carrascal, M., & Abian, J. (2014). A collection of open source applications for mass spectrometry data mining. PROTEOMICS, 14(20), 2275–2279.... -
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Spooky Coder
Auto code generation for many languages.
Quickly define your ORM with the simple Brainstorm format, then instantly create your SQL, Java, PHP, Python, Perl, even C++, etc. code to manage all your object relationships. -
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TWiki Enterprise Collaboration Platform
Open Source Enterprise Wiki and Web Application Platform
Enterprise collaboration platform with over 400 extensions. Users without programming skills can create web applications. 50,000 small businesses, many Fortune 500 companies, and millions of people use TWiki, with installations of 100,000s of pages. Visit http://twiki.org/ for the open source TWiki. The TWiki community is focusing on building the best collaboration platform for the workplace. We invite you to GET INVOLVED! More at http://bit.ly/twGetInv. -
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bspipe
An End-to-End Analysis Pipeline for BS-seq
BSpipe is a comprehensive pipeline from sequence quality control and mapping to functional analysis of differentially methylated regions: (1) sequencing quality assessment, (2) sequence cleaning, (3) sequence read mapping, (4) methylation quantification, (4) sample comparisons based on methylation profile, (5) identification of DMRs (differentially methylated regions), (6) annotation of DMRs, (7) functional analysis of differentially methylated genes, (8) generation of input files... -
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cado
Template-based code generation language.
Cado is a mature code generation language that operates on standard templates with embedded macros. It is useful for generating source code and other related content (tests, docs, configuations, etc.), deriving from a common project nomenclature. -
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As of 2018-06-28, this project has moved to https://github.com/AdamaJava. This copy of the code will remain but all new code updates and releases will be from the new site. Java code developed by the Australian ICGC team for operating on next-generation sequencing data. This code is currently being maintained and expanded by the QIMR Berghofer Genome Informatics team (http://www.qimrberghofer.edu.au/lab/genome-informatics/) More details and documentation can be found on the wiki: http...
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Remote backup tools with Backup generation management, save disk space, filesystem transparent operation based on rsync protocol.
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CSBB-v3.0
CSBB - Computational Suite for Bioinformaticians and Biologists
.... Currently CSBB provides 18 modules focused on analytical tasks like performing upper-quantile normalization, interactive visualization and next generation sequencing pipelines. CSBB now also has capability to process public data. Providing User with End to End pipeline experience. -
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rePhase
A loudspeaker phase linearization, EQ and filtering tool
rePhase project has moved to https://rephase.org, please go there to download rephase and to get info, support and updates. rePhase is a FIR generation tool for building fully linear-phase active crossovers with arbitrary slopes. It also let you manually compensate for the phase shifts of your loudspeakers and existing crossovers, be it active or passive. Once generated, the FIR can be applied using any hardware (openDRC, miniSHARC, Najda, ...) or software (foobar, convolver, JRiver... -
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The increasing demand of next-generation sequencing (NGS) studies has remarked the necessity of integrated and reliable pipelines to analyse deep-sequencing experiments in an efficient way. We present RUbioSeq+, a stand-alone and multiplatform application for the integrated analysis of NGS data. More specifically, our software implements pipelines for the analysis of single nucleotide and copy-number variation, bisulfite-seq and ChIP-seq experiments using well-established tools to perform...
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OraMasking
Data masking tool for Oracle database
For Oracle database, mask sensitive data by replacement (static or expression), substitution (synthetic data set is included), random values (Lorum Ipsum) or deletion. Generates update/delete statements or triggers or runs directly against the database.