Open Source Perl Software - Page 18

A server emulator for EVE Online to allow private servers and offline play.

EvidentialGene is a genome informatics project, "Evidence Directed Gene Construction for Eukaryotes", to construct high quality, accurate gene sets for animals and plants, developed by Don Gilbert at Indiana University, see http://arthropods.eugenes.org/EvidentialGene/ Construction refers to the combination of classical gene prediction, and more recent gene assembly (de-novo and genome-assisted) methods. The basic Evigene methods involve using available best-of-breed gene prediction and assembly software, combining all evidence for genes, from expressed sequences, genome assembly sequences, related species protein sequences, and any other, to annotate and score gene constructions. Over-produced constructions are classified by gene evidence for best qualities per "locus", including genome-aligned and gene-transcript aligned (genome-free) locus identification. All software developed for EvidentialGene is publicly available. See project wiki/blog for notes.

This is an Open Source version of the Health Level 7 protocols commonly used in the medical industry. I am planning on releasing the same library in C, Perl and Tcl. Contributions in other language that attempt to match my API are welcome.

The JS Reader is a JavaScript-based Rapid Serial Visual Presentation program. In RSVP, individual words are presented one at a time in the same place, letting you read up to 3.5 times faster than traditional reading methods with comparable comprehension.

aa-analyzer is a Perl script written by KB1OIQ which collects data from a RigExpert AA-xxx antenna analyzer and outputs it as a CSV file, which can be imported into any spreadsheet program. Please note that this software is distributed within the "Andy's Ham Radio Linux" software collection.

Keypress monitors the time a user spends on his computer. Keypress is intended as an overall worktime monitoring program, the user can follow his worktime on monthly basis. Includes a daemon, command line ui plus a gnome 2 ui (GTK 2).

LASANGE aims at creating a mostly-automated LAN session administration and management system. It will provide game server management (rapid deployment of game servers) and tournament management in a more advanced and automated way than other systems.

Laffer Project is an effort to build complete IM environment using the model for developing Open Source Software. Laffer Project comprises of several small projects.

LXP is a desktop enviroment identical to Windows XP. LXP is a collection of different pieces of GNU software (icewm, xfe, idesk, etc) modified in order to look and feel identical to Windows XP. LXP has its own icewm themes and utility pack.

Plasmid Constellation Network project. Placnet is a new tools for plasmid analysis in NGS projects. Placnet has been written in Perl. It's been optimized to work with Illumina sequences but it also works with 454, Iontorrent or any of the actual sequence technologies. The input of placnet is a set of contigs and one or more SAM files with the mapping of the reads against the contigs. Placnet obtains a set of files, easily opened on Cytoscape software or other network tools. Please cite PLACNET as: Lanza VF, de Toro M, Garcillán-Barcia MP, Mora A, Blanco J, Coque TM, de la Cruz F: Plasmid Flux in Escherichia coli ST131 Sublineages, Analyzed by Plasmid Constellation Network (PLACNET), a New Method for Plasmid Reconstruction from Whole Genome Sequences. PLoS Genet 2014, 10:e1004766.

QTest is a perl-based test framework for testing programs written in any language. It supports a "design for testability" mentality, user-defined test coverage, filters, and multithreading support. Includes documentation.

CLI based, recursive mapping/discovery of network devices via SNMP(CDP/OSPF/BGP MIBs). SNMP(LLDP MIBs), telnet, and SSH are to follow, along with multi-vendor support (right now only supports cisco devices). Requires Perl and Net::SNMP, Net::SSH, and Net::Telnet modules.

The aim of this project is to provide an easy-to-use log-anlyzer for squid-log-files. There is also a webmin modul, to make the log-file-viewing more fun. Perhaps there will also be support for other logfiles in the future. (No longer actively maintained

TransposonPSI is an analysis tool to identify protein or nucleic acid sequence homology to proteins encoded by diverse families of transposable elements.

XParam is an extendable, type-safe, object-oriented tool for general object serialization in C++, good for parsing command-line parameters, cross-program and cross-platform communication, object streams, and as a plug-in framework (using polymorphism).

Performs basic checks on shell scripts for the presence of non portable syntax.

The script helps commiting changes on several branches in CVS by creating a bunch of CVS commands which the user normally would have to create himself.

Why is it quicker to express simple equations in plaintext that it is to write the equivalent LaTeX? Easylatex is a preprocessor to make writing LaTeX much quicker. Project activity mode (http://bayleshanks.com/pamv1 ): sporadic

A fake mail server that captures e-mails as files for acceptance testing. This avoids the excessive configuration of setting up a real mail server and trying to extract mail queue content. Sponsered by Wordtracker.

grepmail searches a normal or compressed mailbox (gzip, bzip2, or tzip) for a given regular expression and returns those emails that match the query. It also supports searches constrained by date.

Convert HTML files to LaTeX files. It is designed to use pdflatex with PNGs. It can do nested tables and has on option to automatically convert to PDFs.

iWatch is a realtime filesystem monitoring program. It is a tool for detecting changes in filesystem and reporting it immediately.It uses a simple config file in XML format and is based on inotify, a file change notification system in the Linux kernel.

a web gateway for GNU .info files

Japana is a small HTTP proxy written in Perl. It converts Japanese characters (Hiragana, Katakana, and Kanji) into ASCII (Romaji) on the fly. The translation is done with the kakasi library (an older version without the need for kakasi still exists).

Converts Outlook .mbx and .dbx files into standard RFC822 mail files. Mailboxes from newer versions of Outlook and Outlook express may not be supported.