Search Results for "cell negative analysis"
Sort By:
Showing 51 open source projects for "cell negative analysis"
View related business solutions-
Over two-thirds of people reuse passwords across sites, resulting in an increasingly insecure e-commerce ecosystem. Learn how passwordless can not only mitigate these issues but make the authentication experience delightful. Implement Auth0 in any application in just five minutes
-
HubSpot is an AI-powered customer platform with all the software, integrations, and resources you need to connect your marketing, sales, and customer service. HubSpot's connected platform enables you to grow your business faster by focusing on what matters most: your customers.
-
1
awesome-single-cell
Community-curated list of software packages and data resources
Community-curated list of software packages and data resources for single-cell, including RNA-seq, ATAC-seq, etc. List of software packages (and the people developing these methods) for single-cell data analysis, including RNA-seq, ATAC-seq, etc. Rapid, accurate and memory-frugal preprocessing of single-cell and single-nucleus RNA-seq data. Find bimodal, unimodal, and multimodal features in your data. Ascend is an R package comprised of fast, streamlined analysis functions optimized to address... -
2
scArches
Reference mapping for single-cell genomics
Single-cell architecture surgery (scArches) is a package for reference-based analysis of single-cell data. scArches allows your single-cell query data to be analyzed by integrating it into a reference atlas. By mapping your data into an integrated reference you can transfer cell-type annotation from reference to query, identify disease states by mapping to healthy atlas, and advanced applications such as imputing missing data modalities or spatial locations. -
3
Scanpy
Single-cell analysis in Python
Scanpy is a scalable toolkit for analyzing single-cell gene expression data built jointly with anndata. It includes preprocessing, visualization, clustering, trajectory inference and differential expression testing. The Python-based implementation efficiently deals with datasets of more than one million cells. -
4
.NET Interactive
.NET Interactive takes .NET and embeds it into your experiences
.NET Interactive takes the power of .NET and embeds it into your interactive experiences. Share code, explore data, write, and learn across your apps in ways you couldn't before. We recently introduced the .NET Interactive Notebooks extension for Visual Studio Code, which adds support for .NET Interactive using the new Visual Studio Code native notebook feature. We encourage you to try it out. .NET Interactive enables users to mix languages in a single notebook or cell without a wrapper... -
Boost application security and continuity with SKUDONET ADC, our Open Source Load Balancer, that maximizes IT infrastructure flexibility. Additionally, save up to $470 K per incident with AI and SKUDONET solutions, further enhancing your organization’s risk management and cost-efficiency strategies.
-
5
MLPACK is a C++ machine learning library with emphasis on scalability, speed, and ease-of-use. Its aim is to make machine learning possible for novice users by means of a simple, consistent API, while simultaneously exploiting C++ language features to provide maximum performance and flexibility for expert users. * More info + downloads: https://mlpack.org * Git repo: https://github.com/mlpack/mlpack
-
6
Sentiment dataset of Algerian dialect
Dataset of 11760 sentiment comments written in Algerian dialect
* To cite this dataset refer to https://doi.org/10.31449/inf.v46i6.3340 * This sentiment dataset of Algerian dialect consists of 11760 comments (6111 positive/ 5649 negative comments)) collected from (Facebook, YouTube and Twitter) during Hirak 2019. * Comments concern the Algerian spoken language, written in Arabic and/or Latin characters and/or Arabizi, which could be either Modern Standard Arabic, French or local dialect. * Value ‘1’ is attributed for Positive review / value ‘0’ attributed... -
7
M32/X32 Show Manager
Reorganize M32/X32 show files
Both the Midas M32 and Behringer X32 share the same design of show management using the console GUI, M32-Edit and X32-Edit apps. This app provides an alternative method to manage these show files (cues, scenes and snippets). It provides an easier method of reorganizing and importing/exporting of files. -
8
GENET-CNV
Integrated DNA copy number variation and gene expression analysis
...-Omics Networks of CD27, PD1, and PDL1 in Non-Small Cell Lung Cancer. Cancers. 2021;13(17). Epub 2021/09/11. doi: 10.3390/cancers13174296. PubMed PMID: 34503105. -
9
... biopsy from cancers, quantitative transcriptome analysis to estimate accurate expression levels of genes or transcripts, and even single-cell sequencing of large cell populations. Operating system: Linux Programming language: C++ License: Non-Commercial Research Use Only
-
Track all your service data in one easy-to-use system, enabling your team to move faster and generate more revenue for your bottom line.
-
10
The Development System for Auditory Modelling (DSAM) is a computational library designed specifically for producing simulations of the auditory system. It brings together many established auditory models within a flexible programming platform.
-
11
NYCOpenData-Profiling-Analysis
Open Data Profiling, Quality and Analysis on NYC OpenData dataset
Open data often comes with little or no metadata. You will profile a large collection of open data sets and derive metadata that can be used for data discovery, querying, and identification of data quality problems. For each column, identify and summarize the semantic types present in the column. These can be generic types (e.g., city, state) or collection-specific types (NYU school names, NYC agency). For each semantic type T identified, enumerate all the values encountered for T in all... -
12
MoPAC
The Modular Pipeline for the Analysis of CRISPR screens
To facilitate the comparison of gene essentialities in two or more cell samples, we propose MoPAC (Modular Pipeline for Analysis of CRISPR screens), a Shiny-driven interactive tool for differential essentiality analysis in CRISPR/Cas9 screens. For installation and usage instructions please refer to the wiki page. -
13
Phenalysis
Analyze agronomic plant research plots in aerial orthomosaic images.
A graphical user interface to import, analyze and export plots from orthomosaic images of agronomic trials. Please cite the following reference in your work if you use Phenalysis: Khan Z and Miklavcic SJ (2019) An Automatic Field Plot Extraction Method From Aerial Orthomosaic Images. Front. Plant Sci. 10:683. doi: https://doi.org/10.3389/fpls.2019.00683 This tool is being developed through the sponsorship of the Australian Research Council's Industrial Transformation Research Hub on Wheat... -
14
pyfolio
Portfolio and risk analytics in Python
pyfolio is a Python library for performance and risk analysis of financial portfolios developed by Quantopian Inc. It works well with the Zipline open source backtesting library. At the core of pyfolio is a so-called tear sheet that consists of various individual plots that provide a comprehensive image of the performance of a trading algorithm. Here's an example of a simple tear sheet analyzing a strategy. Quantopian also offers a fully managed service for professionals that includes Zipline... -
15
DSeg software
A MATLAB program to segment filamentous bacteria and hyphae structures
The analysis of microscopy image has been the basis to our current understanding of the cellular growth and morphogenesis. The quantitative evaluation of morphological changes in the biological processes is therefore important to characterize cell structures. Here we present an image analysis tool DSeg to overcome the difficulties in finding complicated elongated cell shapes by using time-lapse data and cell morphological constraints. A fast binary level-set based algorithm is implemented... -
16
OME-3DR
3D cell reconstruction and quantitative analysis based on OME data
For big OME data analysis, we integrate commonly used quantitative methods, describe our novel strategies to quantify and analyze biological markers related to the cell or organelle spatial-coordinate model, and present open-source OME-3-Dimensional Reconstruction (OME-3DR), a flexible, programmable and batch-oriented tool based on OME data, for reconstructing 3-dimensional (3D) spatial conformations and conducting further analyses, such as the identification, counting, localization... -
17
MORPHEUS for Fiji
A tool for unbiased and reproducible cell morphometry in Fiji/ImageJ2
MORPHEUS is a Fiji/ImageJ2 plugin for the automated evaluation of cell morphometry from cell cultures images acquired by fluorescence microscopy. Specifically, MORPHEUS works with sampling distributions to learn—in an unsupervised manner and by a non-parametric approach—how to recognize the cells suitable for subsequent analysis. Afterwards, the algorithm performs the evaluation of the most relevant cell-shape descriptors over the full set of detected cells. Optionally, also the extraction... -
18
Advanced Vehicle Simulator
Advanced vehicle simulator
This project holds the latest releases for canonical versions of the ADVISOR® Software and "Advanced Vehicle Simulator". ADVISOR is a MATLAB/Simulink based simulation program for rapid analysis of the performance and fuel economy of light and heavy-duty vehicles with conventional (gasoline/diesel), hybrid-electric, full-electric, and fuel cell powertrains. New features are developed under the title "Advanced Vehicle Simulator". Periodically, stable versions of Advanced Vehicle Simulator... -
19
BTable
A drill-anywhere component for Pentaho CDE
... - unlink the table from the dashboard context to stop listening to external parameters - drill a cell or drill a row/column - swap axes - export data and also formatting to Excel - save the current analysis to a file Dashboard designers can build flexible and rich tables with little effort and without writing MDX queries. Also available on Pentaho Marketplace. -
20
Psygraph
Code for the Psygraph mobile application
Psygraph is a Personal Data Collector (PDC) and activity timer. It includes a stopwatch, timer, counter, and note taker (voice recorder), each of which collects data from the device’s sensors (e.g. the device velocity and location (via GPS)). Although the interface is simple (a button or two on each screen), the data is saved for later analysis and display (you can store and view the data on WordPress). It is a scientific instrument that is easy to use. It makes an excellent general-purpose... -
21
GlycoPAT
Comprehensive, open-source tool for glycoproteomics MS data analysis
... this software please cite: Gang Liu, Kai Cheng, Chi Y. Lo, Jun Li, Jun Qu and Sriram Neelamegham. " A comprehensive, open-source platform for mass spectrometry based glycoproteomics data analysis", Molecular Cell Proteomics, 2017 Sep 8, in press. https://doi.org/10.1074/mcp.M117.068239 -
22
TX-TL modeling toolbox
Modeling and analysis tools for the TX-TL cell-free expression system
This project contains tools for using the TX-TL cell-free expression system. These tools include component models for simulating and analyzing biomolecular circuits, as well tools for composing circuits and creating more complex systems. NOTE: This project has been shifted to GitHub: https://github.com/BuildACell/txtlsim -
23
DimensionalAnalysis
Performs dimensional analysis from cells in a spreadsheet.
The Dimensional Analysis tool is meant to be used with spreadsheets containing variable definitions and formulas with physical units. It will execute the definitions and the formulas; and calculate the resulting units. The spreadsheet must follow a standard for the variables and the formulas. The general convention is to put variable names, values & formulas, and units in three columns. Make sure the names match the contents of the name cells. Use the names in the formulas, not the cell... -
24
Engine Emissions & Uncertainty Analysis
Internal combustion engine emissions and uncertainty analysis
This is an open source computer code that was designed to conduct emissions calculations and uncertainty analysis from steady-state internal combustion engine experiments. The code is available in LabView and MATLAB. The LabView code does not conduct uncertainty analysis. Only the MATLAB code conducts uncertainty analysis. The LabView code was designed to be integrated into the test cell and be used in real time while the engine is running. -
25
ChelomEx
Isotope assisted discovery of metal chelating agents from LC-MS data
... in future versions please send me a message. The current version ChelomEx 1.2 from 06 January 2016 includes the following changes to the original version (ChelomEx 1.0): - function to filter discovered isotope patterns after the first analysis step (isotope pattern search), accessible in the Isotope Pattern toolbar (v1.2) - updates for compatibility with MatLab versions after 2014b (v1.2) - siderophore database update (v1.1) - can now also analyze negative mode data (v1.1) - bug fixes (v1.1)