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Scanpy is a scalable toolkit for analyzing single-cell gene expression data built jointly with anndata. It includes preprocessing, visualization, clustering, trajectory inference and differential expression testing. The Python-based implementation efficiently deals with datasets of more than one million cells.
Features
- Documentation available
- Examples available
- Single-Cell Analysis in Python
- It includes preprocessing, visualization, clustering, trajectory inference
- The Python-based implementation efficiently deals with datasets of more than one million cells
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License
BSD LicenseFollow Scanpy
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