Seurat

Seurat is a comprehensive R toolkit for single-cell genomics analysis, introduced by the Satija Lab at NYGC. It supports quality control, normalization, clustering, integration of multimodal data (e.g., scRNA‑seq, spatial, CITE‑seq), and visualization. Seurat v5 introduces scalable workflows and spatial transcriptomics support, commonly used in academic and industry research for single-cell studies.

Features

Quality control and normalization pipelines for scRNA-seq
Dimensional reduction, clustering, and cell-type annotation
Integration across samples and modalities
Spatial transcriptomics analysis and visualization
Handles large-scale datasets efficiently (v5 scalability)
Extensive vignettes, tutorials, and integration with Bioconductor

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License

MIT License

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Additional Project Details

Operating Systems

Linux, Mac, Windows

Programming Language

Related Categories

R Scientific Engineering

Registered

2025-07-29

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