Search Results for "cell negative analysis"
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Showing 98 open source projects for "cell negative analysis"
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SKUDONET ADC, operates at the application layer, efficiently distributing network load and application load across multiple servers. This not only enhances the performance of your application but also ensures that your web servers can handle more traffic seamlessly.
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Over two-thirds of people reuse passwords across sites, resulting in an increasingly insecure e-commerce ecosystem. Learn how passwordless can not only mitigate these issues but make the authentication experience delightful. Implement Auth0 in any application in just five minutes
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awesome-single-cell
Community-curated list of software packages and data resources
Community-curated list of software packages and data resources for single-cell, including RNA-seq, ATAC-seq, etc. List of software packages (and the people developing these methods) for single-cell data analysis, including RNA-seq, ATAC-seq, etc. Rapid, accurate and memory-frugal preprocessing of single-cell and single-nucleus RNA-seq data. Find bimodal, unimodal, and multimodal features in your data. Ascend is an R package comprised of fast, streamlined analysis functions optimized to address... -
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spyder
The scientific Python development environment
Spyder is a free and open source scientific environment written in Python, for Python, and designed by and for scientists, engineers and data analysts. It features a unique combination of the advanced editing, analysis, debugging, and profiling functionality of a comprehensive development tool with the data exploration, interactive execution, deep inspection, and beautiful visualization capabilities of a scientific package. Spyder’s multi-language Editor integrates a number of powerful tools... -
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scArches
Reference mapping for single-cell genomics
Single-cell architecture surgery (scArches) is a package for reference-based analysis of single-cell data. scArches allows your single-cell query data to be analyzed by integrating it into a reference atlas. By mapping your data into an integrated reference you can transfer cell-type annotation from reference to query, identify disease states by mapping to healthy atlas, and advanced applications such as imputing missing data modalities or spatial locations. -
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Scanpy
Single-cell analysis in Python
Scanpy is a scalable toolkit for analyzing single-cell gene expression data built jointly with anndata. It includes preprocessing, visualization, clustering, trajectory inference and differential expression testing. The Python-based implementation efficiently deals with datasets of more than one million cells. -
FortiGate-VM delivers comprehensive security and scalable VPN connectivity for your AWS workloads, while native AWS integrations unlock broad coverage for your environment. Now with support for AWS Graviton2 instances, FortiGate lets you optimize price performance and reduce your Amazon EC2 costs by up to 20 percent. Deploy today in AWS Marketplace.
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.NET Interactive
.NET Interactive takes .NET and embeds it into your experiences
.NET Interactive takes the power of .NET and embeds it into your interactive experiences. Share code, explore data, write, and learn across your apps in ways you couldn't before. We recently introduced the .NET Interactive Notebooks extension for Visual Studio Code, which adds support for .NET Interactive using the new Visual Studio Code native notebook feature. We encourage you to try it out. .NET Interactive enables users to mix languages in a single notebook or cell without a wrapper... -
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Multicell Thin Walled Beam Analysis
Umut YILMAZ Multi-cell Thin Walled Beam Section Analysis
Finding a shear center is a difficult and time consuming job for multi-cell thin walled beam cross sections for engineers. This program makes this process easier. Easy to use GUI and colorful stress analysis results helps engineers. My program is based on my unpublished mechanical engineering master thesis. You can find sample data here too. Save file is easy to edit as text file so optimization can easily be performed. Any feedbacks will be grateful about the project. System requirements... -
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Nest-o-Patch
Software for analysis of patch-clamp recordings and other wave data
This program was designed mainly for preconditioning and analysis of electrophysiological data, including patch-clamp and 2-electrode voltage clamp recordings. The program includes tools both for basic analysis of whole-cell recordings or analysis of single channel properties. Program can display and analyse long traces incuding many sweeps, series and even groups simultaneously. Current amplitudes or time intervals are easily measured. Single channel conductance, kinetics, NPo, as well... -
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Atomes
Analysis, visualization, edition of 3D atomistic models
Atomes is a Free (Open Source) cross-platform software licensed under the terms of the Affero GPL v3+ license. Atoms is a toolbox developed to analyze, to visualize and to create/edit three-dimensional atomistic models. Atomes also provides an advanced input preparation system for further calculations using well known molecular dynamics codes: - Classical MD : DL-POLY and LAMMPS - ab-initio MD : CPMD and CP2K - QM-MM MD : CPMD and CP2K Atomes is developed by Dr. Sébastien Le Roux,... -
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OmicsSuite
OmicsSuite: a suite for multi-omics analysis and visualization.
OmicsSuite (https://github.com/OmicsSuite/, https://omicssuite.github.io), original name BioSciTools, a desktop program developed based on Java 11, aims to make new exploration and contribution to the development of bioinformatics, and realize data analysis and visualization in the fields of sequence analysis, multimomics (transcriptomics, genomics, protein omics, metabonomics, single cell), microbiology, clinical, etc. The program inherits the excellent interactive components, perfect analysis... -
HubSpot is an AI-powered customer platform with all the software, integrations, and resources you need to connect your marketing, sales, and customer service. HubSpot's connected platform enables you to grow your business faster by focusing on what matters most: your customers.
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AnaSP
AnaSP, a MATLAB software suite to ANAlyse SPheroids' features
Today, more and more biological laboratories use 3D cell cultures and tissues growth in vitro as model of in vivo tumours and metastasis. However, a lack of methods for quantitative analysis, limits the usage of spheroids as model for routine experiments. AnaSP is a suite tool for automatic analysis of morphological parameters of spheroids starting by brightfield images manually acquired with a standard widefield microscope. AnaSP is distributed as an open source software tool, and its modular... -
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FUNseq
Cell segmentation/tracking for determing aggresive cancer phenotypes
This page shows the cell segmentation/tracking program for FUNseq pipeline. Identifying a sparse subset of cancer cells from a large heterogeneous population, based on aggressive phenotypes (like invasive migration, multipolar divisions, or asymmetric lineage development) is challenging. Also, such aberration identification is critical, as cells exhibiting these characteristics are linearly correlated with poor prognosis. A high-throughput screening microscope has been developed in our group... -
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TopoIndices
Calculator of topological indices of molecular graphs (from SDF file)
The first step was taken - the 118 topological indices (2D indices) of molecular graphs can be calculated. The description of topoindices is in the file topoindices.pdf (docs folder). For each index there is at least one literature reference. Several indices were not taken into account for this project: some of them are depending on parameters, some are generally not calculable in the real numbers (square roots of negative numbers). The BASIC code was written for JustBASIC (the free younger... -
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MLPACK is a C++ machine learning library with emphasis on scalability, speed, and ease-of-use. Its aim is to make machine learning possible for novice users by means of a simple, consistent API, while simultaneously exploiting C++ language features to provide maximum performance and flexibility for expert users. * More info + downloads: https://mlpack.org * Git repo: https://github.com/mlpack/mlpack
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Sentiment dataset of Algerian dialect
Dataset of 11760 sentiment comments written in Algerian dialect
* To cite this dataset refer to https://doi.org/10.31449/inf.v46i6.3340 * This sentiment dataset of Algerian dialect consists of 11760 comments (6111 positive/ 5649 negative comments)) collected from (Facebook, YouTube and Twitter) during Hirak 2019. * Comments concern the Algerian spoken language, written in Arabic and/or Latin characters and/or Arabizi, which could be either Modern Standard Arabic, French or local dialect. * Value ‘1’ is attributed for Positive review / value ‘0’ attributed... -
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M32/X32 Show Manager
Reorganize M32/X32 show files
Both the Midas M32 and Behringer X32 share the same design of show management using the console GUI, M32-Edit and X32-Edit apps. This app provides an alternative method to manage these show files (cues, scenes and snippets). It provides an easier method of reorganizing and importing/exporting of files. -
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GENET-CNV
Integrated DNA copy number variation and gene expression analysis
...-Omics Networks of CD27, PD1, and PDL1 in Non-Small Cell Lung Cancer. Cancers. 2021;13(17). Epub 2021/09/11. doi: 10.3390/cancers13174296. PubMed PMID: 34503105. -
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coDDMaker
distributions and co-distribution 2D signal analysis
coDDMaker is a MATLAB® App Designer's software program for the guided analysis of the distributions and co-distribution of marker pairs in 2D image. -
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DDMaker
Local Distribution Density Map Maker
DDMaker perform local density analysis and generates pseudocolor maps of the spatial distribution of imaged cellular structures in 2D images, starting from either RGB color, grey level or binary images. DDMaker local density analysis permit to selectively denoise the signal, visualize and quantify its distribution and threshold the image basing on local density. -
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... biopsy from cancers, quantitative transcriptome analysis to estimate accurate expression levels of genes or transcripts, and even single-cell sequencing of large cell populations. Operating system: Linux Programming language: C++ License: Non-Commercial Research Use Only
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The Development System for Auditory Modelling (DSAM) is a computational library designed specifically for producing simulations of the auditory system. It brings together many established auditory models within a flexible programming platform.
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NYCOpenData-Profiling-Analysis
Open Data Profiling, Quality and Analysis on NYC OpenData dataset
Open data often comes with little or no metadata. You will profile a large collection of open data sets and derive metadata that can be used for data discovery, querying, and identification of data quality problems. For each column, identify and summarize the semantic types present in the column. These can be generic types (e.g., city, state) or collection-specific types (NYU school names, NYC agency). For each semantic type T identified, enumerate all the values encountered for T in all... -
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LANDISVIEW 2.0
A tool to visualize, animate, analyze LANDIS images (.gis, .img, tiff)
... Spatial Pattern Analysis Program software FRAGSTATS . LANDISVIEW 1.0 was first released in 2006 at Texas A&M University. The LANDISVIEW 2.0 is an upgraded version of previous LANDSVIEW 1.0 with many new features, was developed in Dr. Weimin Xi's Lab at Texas A&M University - Kingsville. -
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SCiDA Pro
Program for solar cell production data analysis
The purpose of the SCiDA Pro program is to help with processing solar cell production data. It has the following features: - Able to handle large data sets in a fast way (e.g. plotting 100k cell data takes a few seconds) - Easy data filtering - Easy generation of a data summary report - Extensive data plotting features - Cross-platform (Windows/Linux/MacOS) - Supports multiple languages -
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MoPAC
The Modular Pipeline for the Analysis of CRISPR screens
To facilitate the comparison of gene essentialities in two or more cell samples, we propose MoPAC (Modular Pipeline for Analysis of CRISPR screens), a Shiny-driven interactive tool for differential essentiality analysis in CRISPR/Cas9 screens. For installation and usage instructions please refer to the wiki page. -
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Phenalysis
Analyze agronomic plant research plots in aerial orthomosaic images.
A graphical user interface to import, analyze and export plots from orthomosaic images of agronomic trials. Please cite the following reference in your work if you use Phenalysis: Khan Z and Miklavcic SJ (2019) An Automatic Field Plot Extraction Method From Aerial Orthomosaic Images. Front. Plant Sci. 10:683. doi: https://doi.org/10.3389/fpls.2019.00683 This tool is being developed through the sponsorship of the Australian Research Council's Industrial Transformation Research Hub on Wheat...