scArches

Single-cell architecture surgery (scArches) is a package for reference-based analysis of single-cell data. scArches allows your single-cell query data to be analyzed by integrating it into a reference atlas. By mapping your data into an integrated reference you can transfer cell-type annotation from reference to query, identify disease states by mapping to healthy atlas, and advanced applications such as imputing missing data modalities or spatial locations.

Features

Annotating a single-cell dataset using a reference atlas
Identify novel cell states present in your data by mapping to an atlas
Multimodal single-cell atlases
Data integration/batch correction
Spatial transcriptomics
Querying gene programs in single-cell atlases

Project Samples

Project Activity

See All Activity >

License

BSD License

Follow scArches

scArches Web Site

Other Useful Business Software

$300 in Free Credit Towards Top Cloud Services

Build VMs, containers, AI, databases, storage—all in one place.

Start your project in minutes. After credits run out, 20+ products include free monthly usage. Only pay when you're ready to scale.

Get Started

Rate This Project

User Reviews

Be the first to post a review of scArches!

Additional Project Details

Programming Language

Python

Related Categories

Python Data Integration Tool

Registered

2023-06-12

Similar Business Software

Process Street

Process Street is an AI-powered compliance operations platform that automates complex workflows, enforces standards, and tracks audit data in real time. Teams use it to create structured SOPs, assign tasks, collect data, and monitor execution with intelligent oversight. From onboarding and...

See Software
MindCloud

MindCloud is a software company that builds and maintains custom connections between your software and other platforms so you can eliminate manual data entry and start automating and scaling your business. As technology continues to advance, the modern business owner is using more and more...

See Software
Peekdata

Consume data from any database, organize it into consistent metrics, and use it with every app. Build your Data and Reporting APIs faster with automated SQL generation, query optimization, access control, consistent metrics definitions, and API design. It takes only days to wrap any data...

See Software
Declarative Webhooks

Like having Postman inside Salesforce! Declarative Webhooks allows users to quickly and easily configure bi-directional integrations between Salesforce and external systems using a point-and-click interface. No coding is required, making it a fast and efficient and as a native solution,...

See Software
Semarchy xDM

Use Semarchy unified data platform to experience xDM. Discover, govern, enrich, enlighten and manage data. You can easily transform data into insights with xDM and rapidly deliver data-rich applications with automated master data management. Its business-centric interfaces provide for rapid...

See Software
Ditto

Ditto is the only mobile database with built-in edge device connectivity and resiliency, enabling apps to synchronize without relying on a central server or constant cloud connectivity. Through the use of CRDTs and P2P mesh replication, Ditto's technology enables you to build collaborative,...

See Software