Single-cell architecture surgery (scArches) is a package for reference-based analysis of single-cell data. scArches allows your single-cell query data to be analyzed by integrating it into a reference atlas. By mapping your data into an integrated reference you can transfer cell-type annotation from reference to query, identify disease states by mapping to healthy atlas, and advanced applications such as imputing missing data modalities or spatial locations.

Features

  • Annotating a single-cell dataset using a reference atlas
  • Identify novel cell states present in your data by mapping to an atlas
  • Multimodal single-cell atlases
  • Data integration/batch correction
  • Spatial transcriptomics
  • Querying gene programs in single-cell atlases

Project Samples

Project Activity

See All Activity >

Categories

Data Integration

License

BSD License

Follow scArches

scArches Web Site

Other Useful Business Software
Stop Cyber Threats with VM-Series Next-Gen Firewall on Azure Icon
Stop Cyber Threats with VM-Series Next-Gen Firewall on Azure

Native application identity and user-based security for your Azure cloud

Gain integrated visibility across all traffic in a single pass. Deploy Palo Alto Networks VM-Series to determine application identity and content while automating security policy updates via rich APIs.
Get a free trial
Rate This Project
Login To Rate This Project

User Reviews

Be the first to post a review of scArches!

Additional Project Details

Programming Language

Python

Related Categories

Python Data Integration Tool

Registered

2023-06-12