Showing 11442 open source projects for "engineering"

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  • 1
    GNAT

    GNAT

    GNAT recognizes gene names in text and maps them to NCBI Entrez Gene

    GNAT is a BioNLP/text mining tool to recognize and identify gene/protein names in natural language text. It will detect mentions of genes in text, such as PubMed/Medline abstracts, and disambiguate them to remove false positives and map them to the correct entry in the NCBI Entrez Gene database by gene ID. March 2017: We started to upload GNAT output on Medline. See files/results/medline/.
    Downloads: 0 This Week
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  • 2
    FUMOLA - Functional Mock-up Laboratory

    FUMOLA - Functional Mock-up Laboratory

    An FMI-based co-simulation framework.

    FUMOLA is a co-simulation framework specifically designed to support the features offered by the FMI specification. It provides a flexible platform that allows to configure and execute co-simulation setups in an easy way. FUMOLA is developed on top of the Ptolemy II framework (https://ptolemy.eecs.berkeley.edu) and the FMI++ library (http://fmipp.sourceforge.net). The online documentation of FUMOLA is available here: https://sourceforge.net/p/fumola/wiki/Home/
    Downloads: 0 This Week
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  • 3
    A utility for processing command line arguments
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  • 4
    isiKnock

    isiKnock

    In silico knockouts for signaling pathways

    Signaling pathways are complex and intertwined processes. The perturbation of biological systems can reveal the complicated interplay and dependencies of pathway components. isiKnock is a software to automatically conduct and visualize in silico knockouts for signaling pathways (Hannig et al. 2019). isiKnock predicts the knockout behavior based on the calculation of signal flows at steady state. For an explanation of the concept of in silico knockouts, we refer to Scheidel et al. 2016...
    Downloads: 0 This Week
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  • 5

    PanOCT

    Pan-genome Ortholog Clustering Tool

    PanOCT, Pan-genome Ortholog Clustering Tool, is a program written in PERL for pan-genomic analysis of closely related prokaryotic species or strains. Unlike traditional graph-based ortholog detection programs, it uses micro synteny or conserved gene neighborhood (CGN) in addition to homology to accurately place proteins into orthologous clusters.
    Downloads: 2 This Week
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  • 6
    pydictor

    pydictor

    powerful and useful hacker dictionary builder for a brute-force attack

    A powerful and useful hacker dictionary builder for a brute-force attack. You can use pydictor to generate a general blast wordlist, a custom wordlist based on Web content, a social engineering wordlist, and so on; You can use the pydictor built-in tool to safe delete, merge, unique, merge and unique, count word frequency to filter the wordlist, besides, you also can specify your wordlist and use '-tool handler' to filter your wordlist. You can generate highly customized and complex wordlists by modifying multiple configuration files, adding your own dictionary, using leet mode, filter by length, char occur times, types of different char, regex, and even add customized encode scripts in /lib/encode/ folder, add your own plugin script in /plugins/ folder, add your own tool script in /tools/ folder.
    Downloads: 2 This Week
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  • 7
    PangInput

    PangInput

    A simple tool for typing characters in different writing systems.

    PangInput is a simple application to help you in typing characters from different languages in unicode. Three methods are available: 1) a virtual keyboard, mapping specific characters to each key on your keyboard; 2) custom character sets, which you can select by clicking on them; 3) macro sets, allowing input of complex scripts - basically mapping a latin transcription to the actual writing of characters or words.
    Downloads: 0 This Week
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  • 8
    Pootle Django

    Pootle Django

    Online translation tool

    Pootle is written in Python using the Django framework and therefore can be installed on any web server that supports serving WSGI applications. Key localization file formats are supported, including Gettext PO, XLIFF, Java .properties, PHP arrays and many more supported by the Translate Toolkit. Ensures the best quality localizations by automatically detecting common errors made by translators. Integrates user suggestions, terminology, Translation Memory, Machine Translation, and more. A...
    Downloads: 0 This Week
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  • 9

    CNVMM

    CNVMM performs copy number variations detection

    CNVMM specializes in identifying copy number variations (CNVs) when there are repeated sequences in the reference genome. The input file is a single short read mapping result from any short read aligners. However, NNmapper or Bowtie2, which detect all mapping results for multi-reads, are recommended. To use the code, MATLAB installation is required. Mac or Linus system is required.
    Downloads: 0 This Week
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  • 10
    Mathematica-SPICE

    Mathematica-SPICE

    Call SPICE from Mathematica to enable advanced circuit optimization

    This project connects the ubiquitous circuit simulation software, SPICE, with the powerful tools of Mathematica. This allows the optimization of circuits based on arbitrarily complex criteria. For example, automatically tune component values to match a desired filter profile. Tweak a circuit to maximize its efficiency. Match a circuit's output to an arbitrary waveform. As long as you can quantify your goal as a fitness function, you can automate the search for the optimal component specs.
    Downloads: 1 This Week
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  • 11

    NNmapper

    Perform short reads mapping

    NNmapper constructs reference reads library and calculates the Euclidean distances between library reads and query reads. NNmapper can map a query read (1) to the library read that gives the smallest distance (most similar), (2) to the library read that gives the smallest distance while the distance is smaller than a threshold, or (3) all library reads that have distances smaller than threshold. NNmapper has high error-tolerant and is suitable for any read lengths. NN reports all mapping...
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  • 12
    CoSMoSim

    CoSMoSim

    Visual & persistent families of models for CA, DEVS, and Statecharts

    CoSMoSim offers an integrated framework for model development, simulation, & experimentation. Its unified logical, visual, and persistence framework supports specifying families of parallel CA, DEVS, Statecharts, and XML-Schema models (see DEVS-Suite simulator).
    Downloads: 0 This Week
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  • 13
    Fcalgs is a collection of standalone tools implementing algorithms for formal concept analysis.
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  • 14

    Nutrition Tables

    Nutrition Investigator

    This Nutrition Software consists of easy modifiable tables of selected food nutrients in one file, helps to make an individual diet. The information in this file was obtained from: Source (or Adapted from, as appropriate): Canadian Nutrient File, Health Canada, 2010 and other sources. This file gives an idea of which nutrient could be more likely found in fair quantities in some product. Use that file as a reference tool. Do not make any diet plans based on this information only,...
    Downloads: 0 This Week
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  • 15
    Empire

    Empire

    A PaaS built on top of Amazon EC2 Container Service (ECS)

    ...Empire is targeted at small to medium-sized startups that are running a large number of microservices and need more flexibility than what Heroku provides. You can read the original blog post about why we built Empire on the Remind engineering blog. Empire aims to make it trivially easy to deploy a container-based microservices architecture, without all of the complexities of managing systems like Mesos or Kubernetes. ECS takes care of much of that work, but Empire attempts to enhance the interface to ECS for deploying and maintaining applications, allowing you to deploy Docker images.
    Downloads: 3 This Week
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  • 16

    CNCLib

    CNC Interpreter for Arduino

    the project was moved to: https://github.com/aiten/CNCLib see also https://sourceforge.net/projects/cncstepper/ Windows (see download:CNCLib, use .net 4.6.1) * Sending (GCode) to Arduino * Support different machines (axis, range, ...) * Support CNC-Joystick(Arduino based) * Preview * Import HPGL with "Resize" and "Move" * Import Image (laser) * Sample for WPF, WebApi, Enterprise architecture, ... Windows (see download:Plotter) * Sending (HPGL) to Arduino sample sketch...
    Downloads: 0 This Week
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  • 17
    auto_ml

    auto_ml

    Automated machine learning for analytics & production

    ...Make a column_descriptions dictionary that tells us which attribute name in each row represents the value we’re trying to predict. Pass all that into auto_ml, and see what happens! You can pass in your own function to perform feature engineering on the data. This will be called as the first step in the pipeline that auto_ml builds out. You will be passed the entire X dataset (not the y dataset), and are expected to return the entire X dataset. The advantage of including it in the pipeline is that it will then be applied to any data you want predictions on later.
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  • 18

    ATOMKI Common Data Acquisition

    Nuclear physics data acquisition system

    Nuclear physics data acquisition system. The suit of applications can be used to collect data from physics experiments using CAMAC/CAEN/VME devices. The system is quite specialized, but the code can still be useful for others doing something similar...
    Downloads: 0 This Week
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  • 19

    Arithmetic App

    Math App for kids

    This iapp is used by kids to help primary school kids improve their math skill by asking them math questions based on level
    Downloads: 0 This Week
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  • 20
    Downloads: 3 This Week
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  • 21
    SciPy: Scientific Library for Python
    NOTE: the project has moved to https://scipy.org/scipylib/ --- go there to find latest versions. This sourceforge project contains only old historical versions of the software. SciPy is package of tools for science and engineering for Python. It includes modules for statistics, optimization, integration, linear algebra, Fourier transforms, signal and image processing, ODE solvers, and more.
    Downloads: 7 This Week
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  • 22
    diskover

    diskover

    File system crawler and disk space usage software

    diskover is a file system crawler and disk space usage software that uses Elasticsearch to index your file metadata. diskover crawls and indexes your files on a local computer or remote storage server over network mounts. diskover helps manage your storage by identifying old and unused files and give better insights into data change "hotfiles", file duplication "dupes" and wasted space. It is designed to help deal with managing large amounts of data growth and provide detailed storage...
    Downloads: 0 This Week
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  • 23

    mfsizes

    Multi-FASTA sequence (DNA or protein) statistics calculator.

    A simple command-line utility to calculate biological sequence (DNA or protein) sizes in a (multi) FASTA file. It gives averages, GC (or methionine) content, N50, N90, N95, number of N's, and total bases, and can also report by codon if requested.
    Downloads: 0 This Week
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  • 24
    Corpus Toolkit

    Corpus Toolkit

    A text management tool for linguistic purposes...

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  • 25
    Application to optimize DNA sequences coding protein to put in in the different organizm (f.e. human protein in E.Coli). It proposes the optimal cutting places to connect many shorter fragments into bigger one using ligaze.
    Downloads: 0 This Week
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