NNmapper constructs reference reads library and calculates the Euclidean distances between library reads and query reads. NNmapper can map a query read (1) to the library read that gives the smallest distance (most similar), (2) to the library read that gives the smallest distance while the distance is smaller than a threshold, or (3) all library reads that have distances smaller than threshold.

NNmapper has high error-tolerant and is suitable for any read lengths. NN reports all mapping locations for multi-reads.

MATLAB installation required. Mac or Linux system required.

Features

  • Distance-based short reads mapping

Project Activity

See All Activity >

Categories

Bio-Informatics

License

GNU General Public License version 3.0 (GPLv3)

Follow NNmapper

NNmapper Web Site

Other Useful Business Software
8 Monitoring Tools in One APM. Install in 5 Minutes. Icon
8 Monitoring Tools in One APM. Install in 5 Minutes.

Errors, performance, logs, uptime, hosts, anomalies, dashboards, and check-ins. One interface.

AppSignal works out of the box for Ruby, Elixir, Node.js, Python, and more. 30-day free trial, no credit card required.
Start Free
Rate This Project
Login To Rate This Project

User Reviews

Be the first to post a review of NNmapper!

Additional Project Details

Operating Systems

Linux, Mac

Registered

2017-10-24