Search Results for "align" - Page 6
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Showing 152 open source projects for "align"
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NeedlemanWunsch
Fast global sequence alignment for the masses!
MOVED TO GITHUB: https://github.com/noporpoise/seq-align Global optimal sequence alignment using the Needleman-Wunsch algorithm. Aligns DNA, RNA, protein sequence and more! See our sister project local alignment using Smith-Waterman: http://sourceforge.net/projects/smithwaterman/ -
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Ferox
Ferox - Sequence Alignment with Fuzzy K-mers
Ferox is a DNA sequence alignment application that uses fuzzy k-mers to quickly and accurately align sets of sequence reads against a reference genome. Ferox can also be used to align whole genomes. The seeding mechanism used by Ferox is highly configurable, allowing custom fuzzy seeds to be created declaratively in an XML configuration file. -
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CGAP-Align
A new time efficient read alignment tool built on the top of BWA
See Wiki page for details. -
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ClovisGrid
Simple grid overlay that runs over SWTOR.
This program runs a simple grid that displays over SWTOR to allow you to more easily align your GUI with the new patch 1.2 interface editor. New with version 1.3: - Visibility-toggle hotkey (ctrl+shift+home) - Snap cursor to grid! (to toggle, hold ctrl+shift+tab) V 1.3.a - Fixed several problems occurring at certain resolutions. -
Build Agents and Models on One PlatformGemini Enterprise Agent Platform is Google Cloud's comprehensive platform for developers to build, scale, govern, and optimize agents and models. Choose from Google's most advanced models and third-party models like Anthropic's Claude Model Family.
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graphICs
graphICs is a converter transforming GDS II-data to Asymptote-code
...This code can be translated via Asymptote to PDF, PNG or other formats. The output can be specified to be printed on an A-format paper, portrait or landscape, top/right, center or bottom/left align. To use graphICs you need to download the JAR-file containing the program (no installation needed) and the MAP-file containing the color-information for the design (you can modify it or you create your own). To create graphic or PDF-files you need to download Asymptote from asymptote.sourceforge.net. Look at http://sourceforge.net/p/graphicsic/wiki/Usage/ for the Usage. ... -
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This project has been moved to https://github.com/loomchild/maligna . All further development will be done there.
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SmithWaterman
Fast local sequence alignment for the masses!
MOVED TO GITHUB: https://github.com/noporpoise/seq-align An implementation of the Smith-Waterman local sequence alignment algorithm. See our sister project global alignment using Needleman-Wunsch: http://sourceforge.net/projects/needlemanwunsch/ -
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<img src="http://etudiant.univ-mlv.fr/~ofiguero/anaconda_logo_2.gif" align="right" /> A java based file navigator/manager to be used on both Linux and Windows OS
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EGallery
A simple PHP image gallery with cache and no database.
...Features include: - Cached thumbnails to reduce page load times - Upload script to add image files from your web browser - Download all images as a .zip file - Clicking on an image thumbnail prompts users to save the original image file to their computer Credits: - Utilizes the jQuery Masonry plugin to align images: http://masonry.desandro.com/ - Upload script from Uploadify: http://www.uploadify.com/ - Thumbnail creation: http://code.google.com/p/timthumb/ -
Go from Code to Production URL in SecondsSkip the Kubernetes configs. Cloud Run handles HTTPS, scaling, and infrastructure automatically. Two million requests free per month.
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JFinisher
JFinisher is software for alignment, editing and manipulation DNA seqs
JFinisher is software for alignment, editing and manipulation of biological sequences. It aims to assist in the finishing of genome assembly. Starting from a reference sequence, the program align contigs using Smith-Waterman local alignment algoritm with auxiliary methods, allowing management of the alignments generated. It has graphical interface for manipulation and visualization of the actions, uniting features that help in editing the sequences. It has internal projects manageable and ability to export results in the standard formats of the area. -
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A GUI program to create the plasmid database forms for BGME lab. This program presents user with a data entry form for entering plasmid information and automatically converts DNA sequence to protein, aligns it, and creates text output file.
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The program versusSNP is a flexible tool for mining SNPs between two close related genomes. First, we align all the orthologous genes and select SNPs, then the SNPs are separated into categories based on their mutation types.
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CCVisualizer is a multiplatform Closed Caption or Subtitle visualizer for movies or films (es Youtube, Megavideo). By downloading the movie's SRT file, it is possible to visualize it, to pause and to manually align video and text.
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H-mito is a mitochondrial DNA haplogroup prediction tool based on the phylogenetic tree http://www.phylotree.org/. Ancillary scripts: mitoP.py to extract mutation lists and clustal-2-fasta.zip to join, align through clustalw and convert data.
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C++ library for protein sequence profile to profile alignment. Implementing numerous known alignment variants in a flexible and manageable architecture.
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MSBLayout is a LayoutManager for Java AWT and Swing that combines the nested-boxes approach of BoxLayout with flexible constraints as used by GridBagLayout. A concise API minimizes the code required to get good layouts with optimal resizing behaviour
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Reinterpretation of the game concept developed by Jow**d in Pusher, Chromolite is a 2D puzzle game where one moves and tries to align colored pebbles.
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Simpe export filter for WackoWiki syntax for OpenOffice 2 and 3.
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A Java port of LDC's Champollion sentence aligner (http://champollion.sourceforge.net). Intended audience is Natural Language researchers wishing to sentence-align parallel text. In the future, Akerblad will extend Champollion with such features as rule
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Stylus Toolbox is an Epson inkjet printer utility. It shows ink levels, allows you to clean and align your print heads, and to perform a nozzle check. As it is a graphical front-end for escputil, it supports all Epson printers supported by Gutenprint.
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GATA is a graphic alignment tool for comparative sequence analysis. It makes use of BLAST to graphically align two DNA sequences, creating box- line- box representations of window scored local alignments. GATA also displays extensive GFF gene annotation.
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<div align="center"><img src="http://phpole.sourceforge.net/olelogo.gif"></div> phpole is a php script on line editor, which uses web environment as an ide, has a little cvs <hr> phpole es un editor de scripts php, con un sistema de cvs, en el cua
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<img src=http://www.ifrance.com/divisionX/JOE-LOGO.BMP align=left><div><b>JOE</b> -<i>Java Optimization Engine</i>- provides an easy way to optimize programmatically Java applications. <b>JOE</b> is an Ant optional task (like XDoclet or JavaCC).</div><br
