Predicts strains of genomes in Nextgen seq alignment file (sam/bl8)
predicts inversions in Strand-seq data
Assessing mRNA integrity directly from RNA-Seq data
Allelic imbalance meter (Allim), a new tool for measuring allele speci
single-cell RNA-seq analysis software
Fast and more random implementations of java.util.Random.
Web-interface Application for DE pipelines in RNA-seq studies
OLego – short or long RNA-seq read mapping to discover exon junction
a tool for identifying fusion transcripts from paired-end RNA-Seq data
The detection of chromatin interactions
Identification of chromatin accessibility from NOMe-seq
Scalable and accurate targeted gene assembly for large-scale NGS data
Experiment Design for Differential Abundance Analysis
Generates custom UniProt-XML databases from RNA-Seq data
a set of tools for hairpin bisulfite-seq data analysis
Annotation tool for alternative splicing types by RNA-Seq data
A tool for splicing junction calling from RNA-Seq data
Graphical environment for exploratory ChIPSeq data analysis
GenomeScanner displays tag data obtained from Chip-Seq and RNA-Seq.
make wiggle file from bed file for ChIP-seq samples
Integrated pipeline for HT miRNA-Seq data analysis