Search Results for "soapfuse"
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Showing 2 open source projects for "soapfuse"
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fusion-test
Script for fusion detection in DNAseq and RNAseq
fusion_test.sh is a shell script to detect fusion in DNAseq or RNAseq. It uses chimerascan, SOAPfuse, MapSplice2, FusionMap, fusioncatcher, TopHat and EricScript. The output files of chimerascan are further annotated by Jinja and Pegasus Fusion. ***Updated*** Note: EricScript uses old version of Samtools. Download the modified program and Samtools-0.1.19 here. An error in the configuration for fusioncathcer is corrected. -
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SOAPfuse
a tool for identifying fusion transcripts from paired-end RNA-Seq data
SOAPfuse has been published as Method article in Genome Biology, please check http://genomebiology.com/2013/14/2/R12 The official website (*outdated) of SOAPfuse is http://soap.genomics.org.cn/soapfuse.html The wiki home of SOAPfuse is https://sourceforge.net/p/soapfuse/wiki/Home The GitHub repository of SOAPfuse Perl module is https://github.com/Nobel-Justin/SOAPfuse_PM
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