fusion-test

Script for fusion detection in DNAseq and RNAseq

Brought to you by: ccpan

Downloads: 0 This Week

Last Update: 2019-02-23

Get an email when there's a new version of fusion-test

fusion_test.sh is a shell script to detect fusion in DNAseq or RNAseq. It uses chimerascan, SOAPfuse, MapSplice2, FusionMap, fusioncatcher, TopHat and EricScript. The output files of chimerascan are further annotated by Jinja and Pegasus Fusion.

***Updated***
Note: EricScript uses old version of Samtools. Download the modified program and Samtools-0.1.19 here.
An error in the configuration for fusioncathcer is corrected.
FusionMap has been deprecated. It is changed to Oshell.
The old FusionMap is moved to fusionmap.sh.
MapSplice is updated to 2.2.2.

Project Activity

See All Activity >

Follow fusion-test

fusion-test Web Site

Other Useful Business Software

Gemini 3 and 200+ AI Models on One Platform Icon

Gemini 3 and 200+ AI Models on One Platform

Access Google's best plus Claude, Llama, and Gemma. Fine-tune and deploy from one console.

Build, govern, and optimize agents and models with Gemini Enterprise Agent Platform.

Start Free

Rate This Project

Login To Rate This Project

User Reviews

Be the first to post a review of fusion-test!

Additional Project Details

Registered

2015-11-15

Report inappropriate content

Gemini 3 and 200+ AI Models on One Platform

Access Google's best plus Claude, Llama, and Gemma. Fine-tune and deploy from one console.

Build, govern, and optimize agents and models with Gemini Enterprise Agent Platform.

Start Free

Recommended Projects

SAM tools
SAM (Sequence Alignment/Map) is a flexible generic format for storing nucleotide sequence alignment. SAMtools provide efficient utilities on manipulating alignments in the SAM format. The main samtools source code repository moved to GitHub in March 2012. For ongoing development since then, see http://github.com/samtools/samtools
Zynix-Fusion
zynix-Fusion is a framework for hacking
The Fusion Project
Fusion is a Ragnarok Online Server Emulator that is written in Delphi. Fusion is a fork off eWeiss and is succeeded by Prometheus.
Autodesk Fusion 360
Use Autodesk Fusion 360 on Linux
The Prometheus Project
Prometheus is a Ragnarok Online server emulator, based on Fusion 1.2.13, with the vast majority of the old Fusion developers. Prometheus is coded in Borland Delphi 7, and is designed for use on Windows Operating Systems.