SpliceJumper

A tool for splicing junction calling from RNA-Seq data

Brought to you by: reedwarbler

Add a Review

Downloads: 1 This Week

Last Update: 2015-06-18

Download

Get an email when there's a new version of SpliceJumper

SpliceJumper is classification based splicing junction calling tool. For now, it accepts paired-end RNA-Seq reads as input, and calls out the junctions. Also do the alignment.

Project Activity

See All Activity >

Follow SpliceJumper

SpliceJumper Web Site

Other Useful Business Software

Full-stack observability with actually useful AI | Grafana Cloud

Our generous forever free tier includes the full platform, including the AI Assistant, for 3 users with 10k metrics, 50GB logs, and 50GB traces.

Built on open standards like Prometheus and OpenTelemetry, Grafana Cloud includes Kubernetes Monitoring, Application Observability, Incident Response, plus the AI-powered Grafana Assistant. Get started with our generous free tier today.

Create free account

Rate This Project

User Reviews

Be the first to post a review of SpliceJumper!

Additional Project Details

Registered

2014-08-21

Report inappropriate content

Full-stack observability with actually useful AI | Grafana Cloud

Our generous forever free tier includes the full platform, including the AI Assistant, for 3 users with 10k metrics, 50GB logs, and 50GB traces.

Create free account

Recommended Projects

FusionCatcher
Somatic fusion-genes finder for RNA-seq data
RSeQC
RNA-seq data QC
RNASeq-MATS
MATS is a computational tool to detect differential alternative splicing events from RNA-Seq data. The statistical model of MATS calculates the P-value and false discovery rate that the difference in the isoform ratio of a gene between two conditions exceeds a given user-defined threshold. From the RNA-Seq data, MATS can automatically detect and analyze alternative splicing events corresponding to all major types of alternative splicing patterns. MATS handles replicate RNA-Seq data from both paired and unpaired study design. More information can be found at http://rnaseq-mats.sourceforge.net.
kallisto
Near-optimal RNA-Seq quantification
APAtrap
Identification of APA sites from RNA-seq data