Search Results for "plants"
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Showing 72 open source projects for "plants"
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HYPRE
Parallel solvers for sparse linear systems featuring multigrid methods
...It has since been used by research institutions and private companies to simulate groundwater flow, magnetic fusion energy plasmas in tokamaks and stellarators, blood flow through the heart, fluid flow in steam generators for nuclear power plants, and pumping activity in oil reservoirs, to name just a few areas. In 2007, HYPRE won an R&D 100 award from R&D Magazine as one of the year’s most significant technological breakthroughs. -
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Circuitscape.jl
Algorithms from circuit theory to predict connectivity
Circuitscape is an open-source program that uses circuit theory to model connectivity in heterogeneous landscapes. Its most common applications include modeling the movement and gene flow of plants and animals, as well as identifying areas important for connectivity conservation. The new Circuitscape is built entirely in the Julia language, a new programming language for technical computing. Julia is built from the ground up to be fast. As such, this offers a number of advantages over the previous version. -
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SimSEE
Plataform for Simulation of Systems of Electrical Energy
SimSEE is a tool for optimal dispatch of hydrothermal electrical power systems. Yo can simulate de operation of petroleum fired plants, wind and solar farms, country interconnections and hydro plants with reservoires. -
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CO3D (Common Objects in 3D)
Tooling for the Common Objects In 3D dataset
...CO3Dv2 enables research in multi-view 3D reconstruction, novel view synthesis, and geometry-aware representation learning. Each of the thousands of sequences in CO3Dv2 captures a common object (from categories like cars, chairs, or plants) from multiple real-world viewpoints. The dataset includes RGB images, depth maps, masks, and camera poses for each frame, along with pre-defined training, validation, and testing splits for both few-view and many-view reconstruction tasks. -
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openMAINT
Open source solution for the Property & Facility Management
openMAINT is an enterprise open source solution for the Property & Facility Management (CMMS). openMAINT helps to know and manage the inventory, maintenance, logistic and economic information related to buildings, plants and movable assets. openMAINT is a ready-to-use solution, configured with databases, workflows, reports and dashboards. The software can be gradually activated according to the needs of each organization and the available resources. openMAINT includes the modules of Space & Asset Inventory, Facility Maintenance, Logistic Management, Economic Management, Energy & Environment, GIS & BIM. ... -
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TOPCEE
Python GUI tool for estimating plant CAPEX, OPEX, and profitability
TOPCEE (Toyese Oyegoke Process Cost & Economic Evaluator) is a GUI-based Python application designed to assist chemical engineers, researchers, and students in evaluating the profitability of chemical/process plants. The app calculates capital and operational expenditures (CAPEX & OPEX) and provides key profitability metrics such as: **ROI (Return on Investment) **IRR (Internal Rate of Return) **NPV (Net Present Value) **Payback Period (Discounted and Non-Discounted) **Benefit-Cost Ratios Users input plant-specific values like feedstock costs, operating time, product price, and equipment cost — and the tool generates real-time visualizations and results. ... -
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Hyperspectral data analysis in R
Handling and basic analysis of hyperspectral data in R
The hsdar package contains classes and functions to manage, analyse and simulate hyperspectral data. These might be either spectrometer measurements or hyperspectral images through the interface of rgdal. -
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A java based aquarium management database.
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EvidentialGene
Evidence Directed Gene Construction for Eukaryotes
EvidentialGene is a genome informatics project, "Evidence Directed Gene Construction for Eukaryotes", to construct high quality, accurate gene sets for animals and plants, developed by Don Gilbert at Indiana University, see http://arthropods.eugenes.org/EvidentialGene/ Construction refers to the combination of classical gene prediction, and more recent gene assembly (de-novo and genome-assisted) methods. The basic Evigene methods involve using available best-of-breed gene prediction and assembly software, combining all evidence for genes, from expressed sequences, genome assembly sequences, related species protein sequences, and any other, to annotate and score gene constructions. ... -
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Kitchen Garden Aid 2
Plan out your kitchen garden
An easy to use application to design your kitchen garden or your house farm. Helps you plan your plants ( vegetables, fruit trees, herbs, flowers ) so that it respects the rules of crop rotation and companion planting. Based on square foot gardening. A fork of https://sourceforge.net/projects/kitchengarden. The windows installer contains all necessary files. A Linux and Mac package contains scripts and instructions to install the dependencies, and run KGA. -
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Cweed4
Cweed is a C source file weeder for Windows, written in Win32Forth.
...Also available here : https://www.inventio.co.uk/Cweedexe.htm It only changes whitespace (formatting) and does not otherwise change the content of the file. This is analogous to weeding a garden, where the plants are left untouched but the bits between (weeds) may be seriously modified. Cweed is an experiment in specifying a coding standard in the form of an executable program. -
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miRDP2
Accurately and fast analyzing microRNAs transcriptome in plants
miRDeep-P2 (miRDP2) is developed to accurately and fast analyze microRNAs (miRNAs) transcriptome in plants. It is adopted from miRDeep-P (miRDP) with new strategies and overhauled algorithm. We have tested miRDP2 to analyze miRNA transcriptomes in such plants with gradually increased genome size as Arabidopsis, rice, tomato, maize and wheat. Compared with miRDeep-P and several other computational tools, miRDP2 processed NGS data with superior speed. -
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Plant app
A ruby-activeRecord-MySQL application which stores data about plants
A ruby-activeRecord-MySQL application which stores data about plants using the Sinatra ruby framework. Code should work on 2.0.0 ruby version though modern versions should be supported too. (Up to 2.4.6) Also, database supposed to have Hungarian information hence application supports UTF-8. The dummy plant is also written in Hungarian text. -
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An easy to use application to design your kitchen garden or your house farm. Helps you plan your plants ( vegetables, fruit trees, herbs, flowers ) so that it respects the rules of crop rotation and companion planting. Based on square foot gardening. Requires Java 8.
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RTC-simulator
Simulation and Control of Processing Plants
RTC (Real Time Control) is a program of M. Mulholland (2015). This is a simple interactive simulator including 20 different applications for such aspects as PID and DMC controller tuning, advanced level control, Smith prediction, Kalman filtering, and control strategies for a furnace, a boiler, and a hybrid system. A tutorial gives brief background to the theory and programming of each application, plus a stepwise set of objectives to illustrate the main features. The simulations include a... -
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mirplant
miRPlant: An Integrated Tool for Identification of Plant miRNA
please cite: An J, Lai J, Sajjanhar A, Lehman ML, Nelson CC: miRPlant: an integrated tool for identification of plant miRNA from RNA sequencing data. BMC bioinformatics 2014, 15(1):275. We will create index for you if you tell us your interested plants (j.an@qut.edu.au). -
17
micro_tech
This software is about how to increase number of cells
Plants play a important role in our lives to make our environment neat and clean and we designed a software “Mi-cro Tech” in which we increase the cells production through metabolic engineering which is being very effective to us and its cost is also very effective .Now-a-days , the whole world are facing problems of limited fossil fuel re-sources and associated environmental problems and world need some sustainable processes for the production of chemicals, fuels and materials from renewable resources .So, we made a software in which we use metabolic engi-neering technique or transforming microorganisms into efficient cell factories for these compounds. -
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ChimeraDetector
ChimeraDetector detects aberrant chimeras in given genome sequences.
...Chimeric DNA sequences often form during polymerase chain reaction amplification, especially when sequencing single regions to assess diversity or compare populations. Some randomly formed chimeras cause destruction. In plants, Untransformed cells should be easy to detect and remove to avoid chimeras. Because it’s extremely important to maintain the stable ability of the transgenic plants across different generations. Detection and removal of chimeras is therefore of critical importance in such experiments. ChimeraDetector is, therefore, an essential tool in detection of chimeras from genome sequences. -
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ThermoPower is a Modelica library for the modelling of thermal power plants. It provides basic building blocks for system-level dynamic modelling of conventional, combined cycle, combined heat&power, ORC, solar, and nuclear plants.
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mod_openopc
just plain WORKS
mod_openopc is a full featured implementation of the OpenOPC library for Python. It is cross platform compatible (full Python 2.5 and up). We used to recommend running it on a POSIX platform (Unix / Linux), but thanks to modest efforts since 2014, performance in Windows OS environments is excellent. -
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...Designed and written by a team at the Museum of Comparative Zoology. Includes a PreCapture barcode application refactored from this code base with support from the US National Science Foundation ADBC TCN for New England Vascular Plants NSF #1208835 Precapture Application: http://doi.org/10.5281/zenodo.154176 Migrated to GitHub PreCaptureApp: https://github.com/MCZbase/PreCapture Desktop App https://github.com/MCZbase/DataShot_DesktopApp Web App components: https://github.com/MCZbase/datashot_ejb https://github.com/MCZbase/datashot_web https://github.com/MCZbase/datashot_ee
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MITP
MITP - conserve & novel miRNA identification & target prediction tool
miRNA is a widely known small non-coding RNA which can mediate gene regulation of most important biological processes in plants and animals. Therefore, identification conserve and novel miRNA and their target genes in model and new sequenced species are inevitable. MITP is designed to identify miRNA easily and faster based on sequence mapping result from any mapping software which producing SAM format output result, blast result (default output result) or blat result (default output result). ... -
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ngPlant is a plant modeling software package. ngPlant interactive tool can be used to create 3D models of different plants and trees. ngPlant software libraries can be used by developers in their 3D applications, or plant modeling plugins.
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ncPRO-seq
Non-Coding RNA PROfiling from sRNA-seq
ncPRO-seq is a tool for annotation and profiling of ncRNAs from smallRNA sequencing data. It aims to interrogate and perform detailed analysis on small RNAs derived from annotated non-coding regions in miRBase, piRBase, Rfam and repeatMasker, and regions defined by users. The ncPRO pipeline also has a module to identify regions significantly enriched with short reads that can not be classified as known ncRNA families. ############# Docker version : download and run Dockerfile (go in... -
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Plant Senescence Analysis
Accurate analysis of plant senescence by colour distortion corr
...Therefore objective valuation of plant senescence by color image analysis is desirable for high throughput plant phenotyping. The plant colors in images may not represent the original colors of plants due to imperfect camera lenses and camera settings. In this case, color analysis for the senescence estimation may result in significant error. In this method, we propose a novel algorithm to have the effects of both the color distortion correction and the deblurring for senescence analysis.
