Search Results for "research" - Page 92
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Showing 15060 open source projects for "research"
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TSMiner is a software program for reconstructing time-specific regulatory networks for time-series expression data. TSMiner has three key modules: first, predicting the time-specific activated/repressed transcription factors (TFs); second, predicting the biological pathways associated with the predicted TFs; third, merging the TFs and pathways into time-specific regulatory networks. TSMiner provides extensive interactive operations to help users explore the results of each module. For...
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WRF_ELEC
Storm electrification package for the WRF-ARW
NOTE: For WRF-ELEC with version 4.5.1, go to https://github.com/MicroTed/wrf4-elec This (older) project provides the external files need to compile electrification into the Weather Research and Forecasting (WRF) model (version 3.9.1.1 currently). It contains modules for the lightning discharge scheme, the screening layer parameterization, communications, and include code that calls these subroutines. Note that the required elliptic equation solver is a separate download from <http://sourceforge.net/projects/boxmg4wrf> -
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GenSeed-HMM
Progressive assembly tool using DNA, protein or profile HMMs as seeds.
GenSeed-HMM is a program for seed-driven progressive DNA assembly. It differs from the previously published GenSeed in many aspects, but more pointedly by being able to use an HMM profile as seed. Basically, GenSeed-HMM performs three operations, repeatedly: - recruit reads by matching them to a seed - assemble the recruited reads (including previously assembled contigs) - generate new seeds (for the next round of progressive assembly) from the extremities of all generated... -
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SPIRE
A tool to compute projections of membrane structures
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Talend Spatial Module (aka Spatial Data Integrator or SDI) is an ETL tool for geospatial. Based on Talend Open Studio, input, output and transform geocomponents are available. IO components read/write GIS formats(eg.PostGIS, GeoRSS). Transformers all
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geostd is an open-source set of restraints for molecules involved in macromolecular structure refinement. The restraints reduce the number of variables making the solution of protein structures a more tractable process.
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lxspider
Educational Python web scraping case collection for many sites
...It focuses heavily on practical cases that illustrate how different platforms handle requests, authentication parameters, and anti-scraping protections. lxSpider includes examples targeting areas such as e-commerce platforms, social media services, content sites, research databases, and information portals. Many of the cases explore techniques related to request analysis, signature generation, and reverse engineering that are often needed when interacting with modern web applications. It also provides supplementary materials and tools used in crawling workflows, such as debugging utilities and reverse-engineering aids. -
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slimfastq
An efficient lossless compression for fastq files.
slimfastq is a cli application that compresses/decompresses fastq files. It features: * High compression ratio * Relatively low cpu/memory usage * Truly lossless compression/decompression -
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iPath is providing an free and open plattform for "case based collaboration", especially designed for medical applications (telemedicine, etc). The iPath-Server package provides a sort of medical BBS to discuss/consult cases online. Additional modules
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corona
Reverse engineering SARS-CoV-2
...The project identifies and annotates proteins encoded by the genome. It also experiments with OpenMM for molecular simulation and protein-folding work. Supporting data, protein resources, vaccine-related material, research questions, and analysis notes make the repository a hands-on workspace for studying viral structure and genetics. -
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DCT
Diffraction Contrast Tomography analysis code
Diffraction contrast tomography code base, as developed by researchers from beamline ID19 of the ESRF, Grenoble, France, and Manchester University, UK. -
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Cantera is a suite of object-oriented software tools for problems involving chemical kinetics, thermodynamics, and/or transport processes. It can be used from MATLAB, Python, C++, or Fortran.
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TTS
Deep learning for text to speech
TTS is a library for advanced Text-to-Speech generation. It's built on the latest research, was designed to achieve the best trade-off among ease-of-training, speed, and quality. TTS comes with pre-trained models, tools for measuring dataset quality, and is already used in 20+ languages for products and research projects. Released models in PyTorch, Tensorflow and TFLite. Tools to curate Text2Speech datasets underdataset_analysis. -
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Reproducible-research
A Reproducible Data Analysis Workflow with R Markdown, Git, Make, etc.
In this tutorial, we describe a workflow to ensure long-term reproducibility of R-based data analyses. The workflow leverages established tools and practices from software engineering. It combines the benefits of various open-source software tools including R Markdown, Git, Make, and Docker, whose interplay ensures seamless integration of version management, dynamic report generation conforming to various journal styles, and full cross-platform and long-term computational reproducibility.... -
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FCSalyzer
FCSalyzer is a free program for analysing flow cytometry data
FCSalyzer is a free program for analysing flow cytometry data. It is programmed in Java and should therefore work on many different operating systems. FCSalyzer offers an easy What-you-see-is-what-you get interface and provides the standard analysing tools - dot plots, histograms, complex gating strategies and associated statistics. Impressum / Legal Notice Sven Mostböck Wien Austria e-mail: sven_mostboeck@users.sourceforge.net second contact option: use the open discussion on the... -
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Neurolinux
Neurolinux, the Deep Learning OS
Neurolinux, the Deep Learning OS, with all necessary tools and libraries pre-installed. Pytorch, Tensorflow Jupyter notebooks...etc -
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This application is intended to be a tool for easy, almost automatic, creation and calculation of gear transmission finite element models. It consists of a geometry and mesh generator based on GMSH and a finite element model based on GETFEM++.
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ccplot
CloudSat and CALIPSO plotting tool
ccplot is an open source command-line program for plotting profile, layer and earth view data sets from CloudSat, CALIPSO and Aqua MODIS products. -
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...By leveraging CNN architectures, the project showcases how learned embeddings can capture semantic similarity across varied images. This resource serves as both an educational reference and a foundation for further exploration in image retrieval research.
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openTCS
open Transportation Control System
openTCS is a platform-independent transportation control system (TCS) intended to manage fleets of automatic guided vehicles (AGVs), but can be used to manage virtually any automatic vehicle. It consists of an abstract kernel that implements replaceable algorithms and strategies (computation of routes, dispatching of orders to vehicles, scheduling of resources etc.), pluggable vehicle drivers that implement communication protocols and a graphical frontend for creating and visualizing logical... -
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...It constitutes the Supporting Information for a scientific article entitled "Application of blended physical-virtual experiments and flipped instruction in a fundamental fluid mechanics course: a design-based research study" submitted to Computer Applications in Engineering Education. The educational material contained in this dataset is shared under the GNU General Public License v3.0. Please read the licence terms from the following link: https://www.gnu.org/licenses/quick-guide-gplv3.html
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Distributed MultiThreaded Checkpointing
Checkpoint/Restart functionality for Linux processes
DMTCP (Distributed MultiThreaded Checkpointing) transparently checkpoints a single-host or distributed computation in user-space -- with no modifications to user code or to the O/S. It works on most Linux applications, including Python, Matlab, R, GUI desktops, MPI, etc. It is robust and widely used (on Sourceforge since 2007). For the newest releases of DMTCP, please go to: https://github.com/dmtcp/dmtcp Among the applications supported by DMTCP are MPI (various implementations),...
