Search Results for "research" - Page 89
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Showing 15060 open source projects for "research"
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MutaNET
NGS Pipeline and Automated Mutation Analysis
MutaNET comes with a next generation sequencing (NGS) pipeline that calls mutations based on paired-end NGS reads, an automated mutation analysis tool and various file converters and mergers. The mutation analysis feature considers the coding region, protein domains, regulation and transcription factor binding site information, and can be used to analyse the potential impact of mutations on antibiotic resistance. -
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GenoCline
GenoCline is a free Java software for genetic cline analysis
Identification of clines from allele frequency or genome-wide databases. Angular transformation. Sigmoid function. Parameterization of a cline: orientation, Pearson’s product-moment correlation coefficient, linear and sigmoid regression and coefficient of determination. Graphical representation of the cline. Confidence limits. Spatial autocorrelation. Moran's index. Isolation by distance. Exponential regression. Correlation Fst/Distance. Centroid method. Cline's expected vs. predicted... -
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This is software to create web dictionaries, esp. for Esperanto like Reta Vortaro (http://reta-vortaro.de). A dictionary is made from articles written in a special XML dialect by transformations using XSLT, ant and some Java code.
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chips
8-bit chip and system emulators in standalone C headers
...The repository contains chip cores, complete system implementations, user-interface components, code generation tools, and utility code. Separate projects provide tests, examples, WebAssembly demonstrations, schematics, manuals, and research material. Its design makes the emulators easy to embed inside games, debugging tools, educational software, or browser applications. -
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Easy Agent Simulation
Java-based agent simulation platform
EAS is a Java-based simulation platform, developed as part of a research project at the Karlsruhe Institute of Technology. It comes with a broad range of pre-developed simulation scenarios, ranging from virtual agents acting in abstract environments to agents with a spatial representation in 2D or 3D. It is built upon a novel architecture using a separate "plugin layer" to communicate between the simulation engine and the simulated model. -
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pydatascope
Software oscilloscope using Python and tkinter
Software oscilloscope using Python and tkinter. Supports multiple sources: socket, file, audio, USB. Displays data by samples, time or frequency. Scales the input automatically or manually. -
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miRDP2
Accurately and fast analyzing microRNAs transcriptome in plants
miRDeep-P2 (miRDP2) is developed to accurately and fast analyze microRNAs (miRNAs) transcriptome in plants. It is adopted from miRDeep-P (miRDP) with new strategies and overhauled algorithm. We have tested miRDP2 to analyze miRNA transcriptomes in such plants with gradually increased genome size as Arabidopsis, rice, tomato, maize and wheat. Compared with miRDeep-P and several other computational tools, miRDP2 processed NGS data with superior speed. By incorporating newly updated plant miRNA... -
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Trape
OSINT tool for tracking users and analyzing browser data online
...Trape was originally created to educate the public about how large internet services may obtain confidential information such as session status or browser details without users realizing it. Over time, it has evolved into a research platform that helps analysts track cybercriminal activity and study online tracking mechanisms. -
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Marathi MTLD tool (for GNU/Linux)
A tool for measuring MTLD score of Marathi-Devanagari text
This tool has been developed as part of M. Phil. research work submitted to the Department of Linguistics, University of Mumbai in 2021. This is version 0.1 of the tool. The tool calculates the number of repeated words present in the Marathi text written in the Devnagari script by using the Measure of Textual Lexical Diversity (MTLD) approach. The program performs the lemmatization process on input text before calculating its MTLD score. -
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VITS
Conditional Variational Autoencoder with Adversarial Learning
VITS is a foundational research implementation of “VITS: Conditional Variational Autoencoder with Adversarial Learning for End-to-End Text-to-Speech,” a well-known neural TTS architecture. Unlike traditional two-stage systems that separately train an acoustic model and a vocoder, VITS trains an end-to-end model that maps text directly to waveform using a conditional variational autoencoder combined with normalizing flows and adversarial training. -
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event-horizon
Shows the event horizons of two approaching black holes
Some quick back-of-the-envelope calculations for the combined event horizons of two approaching black holes. -
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Quan is designed to model physical quantities in C++ programs. Advantages include automated dimensional analysis checking, automatic unit conversions, self documentation of code.
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dune-archiso
Archiso profile based on CyberOS with DUNE Numerics
This is a live USB containing a full operating system that can be booted, this means that you can use a USB stick to burn this image or virtualize it to Linux-KVM, QEMU, Virtualbox, VMWare, Hyper-V. We included the following Arch Linux official repositories: - [core] - [extra] - [community] - [multilib] as well as Third-party repositories: - [arch4edu] - [cyber] - [dune-archiso-repository-core] - [dune-archiso-repository-extra] - [dune-core] - [dune-staging] -... -
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Zarja
Agent-based simulation toolkit
It is an open source scientific library that is focused on multi-agent simulations on graphs. It prepares basic toolkit for agents, models, timers, graphs, nodes and edges. It is also accompanied with tools for data processing. -
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Allelome.PRO
A pipeline to define allele-specific genomic features
Detecting allelic biases from high-throughput sequencing data requires an approach that maximises sensitivity while minimizing false positives. Here we present Allelome.PRO, an automated userfriendly bioinformatics pipeline, which uses high-throughput sequencing data from reciprocal crosses of two genetically distinct mouse strains to detect allele-specific expression and chromatin modifications. Allelome.PRO extends approaches used in previous studies that exclusively... -
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Temporal.jl
Time series implementation for the Julia language
...While still early in development, the overarching goal is for the class to be able to slice & dice data with the rapid prototyping speed of R's xts and Python's pandas packages, while retaining the performance one expects from Julia. See the documentation for a more in-depth look at the package and some of the pain points it may solve when doing technical research with time series data. -
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Gabedit is a Graphical User Interface for FireFly (PC-Gamess), Gamess-US, Gaussian, Molcas, Molpro, MPQC, NWChem, OpenMopac, Orca, PSI4 and Q-Chem computational chemistry packages.
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SingleCellSeqCNV
Detection of Copy Number Alterations by Single Cell Sequencing
Detection of Copy Number Alterations by Single Cell Sequencing Kristin A. Knouse, Jie Wu and Angelika Amon, Assessment of megabase-scale somatic copy number variation using single cell sequencing. Genome Research, 2016. gr. 198937.115 Kristin A Knouse, Jie Wu, Charles A Whittaker and Angelika Amon. Single cell sequencing reveals low levels of aneuploidy across mammalian tissues. Proceedings of the National Academy of Sciences, 2014. 111(37):13409-13414. -
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CBFortran
A customized distribution of Code::Blocks IDE for Fortran language
Code::Blocks for Fortran is a customized distribution of the open-source Code::Blocks IDE which includes some enhancements for programming using Fortran language. -
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TemaTres: controlled vocabulary server
Manage, Publish and Share Ontologies, Taxonomies, Thesauri, Glossaries
Web application for management formal representations of knowledge, thesauri, taxonomies and multilingual vocabularies / Aplicación para la gestión de representaciones formales del conocimiento, tesauros, taxonomías, vocabularios multilingües. For the latest version of code: https://github.com/tematres/TemaTres-Vocabulary-Server -
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academic
A Jekyll theme for academia
A Jekyll theme designed for academia, although you can use it for almost any other purpose as well. -
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PyCls
Codebase for Image Classification Research, written in PyTorch
pycls is a focused PyTorch codebase for image classification research that emphasizes reproducibility and strong, transparent baselines. It popularized families like RegNet and supports classic architectures (ResNet, ResNeXt) with clean implementations and consistent training recipes. The repository includes highly tuned schedules, augmentations, and regularization settings that make it straightforward to match reported accuracy without guesswork. -
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Open Grid Analysis and Display System
OpenGrADS provides extensions and interfaces for GrADS.
The Grid Analysis and Display System (GrADS) is an interactive desktop tool for easy access, manipulation, and visualization of earth science data. The OpenGrADS Project seeks to develop advanced interfaces and extensions based on the main GrADS engine.
