Search Results for "detection" - Page 49
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Showing 1990 open source projects for "detection"
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Flexbar
flexible barcode and adapter removal for sequencing platforms
Flexbar moved to https://github.com/seqan/flexbar The program Flexbar processes high-throughput sequencing data efficiently. It demultiplexes barcoded runs and removes adapter sequences. Moreover, trimming and filtering features are provided. Flexbar supports next-generation sequencing data in fasta and fastq format, e.g. from the Illumina platform. Reference: Matthias Dodt, Johannes T. Roehr, Rina Ahmed, Christoph Dieterich: Flexbar — flexible barcode and adapter processing for... -
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VarScan
Variant detection in next-generation sequencing data
Variant detection in massively parallel sequencing. For one sample, calls SNPs, indels, and consensus genotypes. For tumor-normal pairs, further classifies each variant as Germline, Somatic, or LOH, and also detects somatic copy number changes. THE LATEST VERSION IS AVAILABLE ON GITHUB -
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Featureextraction
Feature Extraction: Fractal, Statistical, Geostatistical, Succolarity
The objective of this project is to find in the literature the best feature extractors related to the detection and diagnosis of disease in the breast, and implement them in order to make it open to research groups worldwide. The features will be available as an API (Application Programming Interface) in Java. -
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BreakSeek
A breakpoint-based algorithm for full spectral range INDEL detection
BreakSeek is a breakpoint-based algorithm for full spectral range INDEL detection, which can unbiasedly and efficiently detect both homozygous and heterozygous INDELs, ranging from several base pairs to over thousands of base pairs, with accurate breakpoint and heterozygosity rate estimations. -
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jQuery navobile
A jQuery plugin that makes mobile navigation easy
A jQuery plugin that makes mobile navigation easy. Navobile uses CSS to apply CSS3 translations, Mobile device detection, and fix the position of the nav. In the CSS file we used for this demo and the one that is included in the src folder the mobile breakpoint is at 765px using a media query, you can, of course, change this to suit your needs. Changing the timing function used by the transform alters Navobile's css. The available timing functions available are listed on MDN although we don't recommend any of the step timing functions. ... -
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Wireless Universal Resource File
Handset Detection for Mobile Applications. Device Description Database
WURFL lets you detect thousands of types of mobile devices accessing your web service and take decisions based on what that device can or cannot do. With WURFL, you can optimize mobile web content, effectively deliver advertisements, or analyze mobile traffic. WURFL will read HTTP requests from mobile browsers and search the Device Description Repository (DDR) for the corresponding device properties (i.e. capabilities). WURFL will return the device capabilities to your application, which... -
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This project is based on pygame which has the power to simplify graphical output in some cases. Additionally it includes methods for user input, some collision detection, sound and file access supporting ominous structures. However this project is very limited and has more or less just been an educating experience for myself. Thanks
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louvain
Louvain method for community detection in large graphs
An implementation of the Louvain method for community detection in large graphs. A version using other quality functions than modularity is also available. -
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Project Razorback(tm). A framework for detection.
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quban
Quban is a usenet binary newsgrabber for Linux
News August 2nd 2015 Quban version 0.7.5 now available from the website: http://quban.sourceforge.net/ . Please read the release notes at http://quban.sourceforge.net/releases.php#0.7.5 Quban is a Qt4 program to download encoded articles from Usenet, originally forked from Klibido 0.2.5. It supports multiple servers, multiple download threads per server plus automatic joining, decoding, repair and unpacking of articles. -
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Virmid
Virtual Microdissection for SNP calling
NEWS: 11-07-2013 A new version Virmid 1.1.0 has been uploaded. 08-29-2013 Virmid paper is now published in Genome Biology. Kim S et al, "Virmid: accurate detection of somatic mutations with sample impurity inference", Genome Biology 2013, 14:R90 http://genomebiology.com/2013/14/8/R90/abstract Virmid (Virtual Microdissection for SNP calling) is a Java based variant caller designed for disease-control matched samples. Virmid is also specialized for identifying potential within individual contamination where the disease sample cannot be purified enough. ... -
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Auto Whitelist automates the detection of safe/valid email addresses by plugging into Postfix and monitoring sent mail and building a whitelist. It then automatically tags all incoming email with information regarding the senders email address status.
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This is a sophisticated & integrated simulation and analysis environment for dynamical systems models of physical systems (ODEs, DAEs, maps, and hybrid systems). It supports symbolic math, optimization, continuation, data analysis, biological apps...
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ANNGD
Artificial neural network gender detection
ANNGD is a artificial neural network gender detection application. The detection is made in real time images captured by webcam by opencv library. The package include applications to image pre-processing and artificial neural network back-propagation training. -
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This is an Image Processing toolkit written in Java. The source code is intended to help you understand processes such as Color Inversion, Edge Detection, Fourier Transform, Morphological process, Laplacian Sharpening, Gaussian Noise Adding, and hist
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mp3splt
utility to split mp3, ogg vorbis and FLAC files without decoding
mp3splt is a free utility to split mp3, ogg vorbis and FLAC files without decoding, selecting begin/end time; if file is an album, you can get splitpoints automatically from internet or a local cue, cddb file. It also splits Mp3Wrap and AlbumWrap archives. Supports splitting and trimming by silence detection. For mp3 files, both ID3v1 and ID3v2 are supported using original tags or user defined tags. -
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Single-Trial Feature Detection in ERPs
Automatic detection of Even-Releated Potentials
This algorithm automates the process of detecting N1, N2 and P2 features (peaks amplitude and latency) in ERPs. This is achived by a basic processing of the signal using Single-Trial EEG's derivative to find the possible peaks and then a fuzzy logic process to clasify them. -
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detectIR
Detection of Perfect and Imperfect Inverted Repeats
detectIR - a MATLAB-based tool for detecting perfect and imperfect inverted repeats in genomes. [1] Who are we? Please visit website: http://bioinfolab.miamioh.edu [2] How to cite detectIR? Ye C, Ji G, Li L, Liang C (2014) detectIR: A Novel Program for Detecting Perfect and Imperfect Inverted Repeats Using Complex Numbers and Vector Calculation. PLoS ONE 9(11): e113349. http://journals.plos.org/plosone/article?id=10.1371/journal.pone.0113349 [3] detectIR user manual... -
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mahasona
Mahasona engine is an open source game engine.
Mahasona Engine is a Game engine written on top of OpenGL renderer. Currently no official release but svn repository version. Includes an example application. Find the wiki page for howto's Ubuntu Video http://www.youtube.com/watch?v=y5OSCTb_aNA Windows Video http://www.youtube.com/watch?v=dS_YwzyCjn4 Projects using Mahasona Engine- 1. Snap-n-fold: origami pattern generation based real-life object structure http://dl.acm.org/citation.cfm?id=2223800 -
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CONMAP
Geobody connectivity analysis tool in geosciences. New version: 2.0
...Open a command prompt, go to the directory where you download CONMAP.jar and enter the command "java -jar CONMAP.jar <arguments>" (without quotation marks) to run the program. Geobody detection itself runs pretty fast, with almost all execution time spent in file loading, parsing and saving. New features in version 2.0: geobody walk, vertical transitions count and mean thickness. See details running CONMAP without arguments. -
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QuickNXS
Polarized ToF reflectivity raw data analysis tool
Data evaluation tool for the magnetism reflectometer at the spallation neutron source (BL-4A@SNS). Reads raw nexus files (HDF5) of histogrammed or event mode data to create reflectivity curves and 2D Q-maps. -
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FaceAccess Facial Recognition System
FaceAccess is an Access Control System based on Facial Recognition
With the growing need to exchange information and share resources, information security has become more important than ever in both the public and private sectors. Although many technologies have been developed to control access to files or resources, to enforce security policies, and to audit network usages, there does not exist a technology that can verify that the user who is using the system is the same person who logged in. FaceAccess provides a prototype implementation as a "login... -
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P-VCD
Content-Based Video Copy Detection
Software for Video Copy Detection. The software has been described in some scientific papers, e.g. http://dx.doi.org/10.1109/ICME.2011.6012212 and http://dx.doi.org/10.1007/s11042-011-0915-x. This software is the result of my PhD at the University of Chile and the participation at TRECVID Content-Based Copy Detection (CCD) evaluation task 2010 and 2011. More details in http://www-nlpir.nist.gov/projects/tv2011/tv2011.html#ccd and in http://www-nlpir.nist.gov/projects/tvpubs/tv11.papers/prisma.pdf P-VCD has also been used at TRECVID tasks: Instance Search (INS) 2012-2013 and Multimedia Event Detection (MED) 2013. ... -
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FreeSOLID is a library for collision detection of three-dimensional objects undergoing rigid motion and deformation. FreeSOLID is designed to be used in interactive 3D graphics applications.
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BIRAP
Bacterial Intergenic Region Analysis Pipeline
BIRAP (Bacterial Intergenic Region Analysis Pipeline) is an open source, easy to use Perl pipeline that can be used to re-annotate bacterial genomes using experimental data. The tool integrates expression profile derived from RNA-seq and/or proteogenomics, compares it with existing in silico annotation and helps validate annotation, identify novel protein coding regions, putative non-coding RNA as well as help correct er-rors in the existing annotation. The pipeline requires “pileup” output...