Search Results for "breast cancer detection"
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Showing 27 open source projects for "breast cancer detection"
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Deploy Red Hat Ansible Automation Platform on Microsoft Azure for a strategic automation solution that allows you to orchestrate, govern and operationalize your Azure environment.
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SafetyIQ is revolutionizing the way businesses approach safety. As a leading provider of comprehensive workplace safety software, we cater to four key areas: Mobile Worker Safety, EHS (Environment, Health, and Safety), Fatigue Management, and Training. Our platform is designed to safeguard your workers, no matter their location or task, ensuring all-around safety compliance. Unlike most safety software providers that only react to incidents or implement proactive measures, SafetyIQ introduces a third pillar to safety management - predictive analytics. We transform the untapped wealth of safety data within your organization into actionable insights to inform safety strategies, mitigating risks even before they aris
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BCI
BCI: Breast Cancer Immunohistochemical Image Generation
Breast Cancer Immunohistochemical Image Generation through Pyramid Pix2pix. We have released the trained model on BCI and LLVIP datasets. We host a competition for breast cancer immunohistochemistry image generation on Grand Challenge. Project pix2pix provides a python script to generate pix2pix training data in the form of pairs of images {A,B}, where A and B are two different depictions of the same underlying scene, these can be pairs {HE, IHC}. Then we can learn to translate A(HE images... -
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HealthFusion
AI Disease Detections System
HealthFusion has identified a critical business problem, which is the lack of accessibility and timely detection of multiple diseases. The traditional approach of detecting diseases is time-consuming, expensive, and not accessible to everyone, especially in remote areas. This problem can lead to delayed diagnosis and treatment, which can have serious consequences for patients. The proposed solution, HealthFusion, is novel and practical as it offers a comprehensive solution to detect multiple... -
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KMedicalImageScreener1
A Medical Scanner for Computer Aided Detection of MRI Scans
This app is JSP that has been tested for use in Computer Aided Detection of MRI scans in the cranial and abdominal areas for cancer detection. There was one case study completed with a very high accuracy rate of over 95% on test data. This app is provided as-is under the GNU License with Accrediation. Let me know what you think, Diana -
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Cell proliferation is defined as the process that leads to an increase in the number of cells and the balance between cell divisions and cell loss. Cell proliferation plays an important role in regular tissue and cellular homeostasis for proper growth, development and maintenance of the organism. Moreover, abnormal cell proliferation is associated with different diseases, such as cancer. The cell proliferation assays can be used for pharmaceutical drug discovery and diagnostic purposes.
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Define and Deliver Comprehensive Cybersecurity Services. Security threats continue to grow, and your clients are most likely at risk. Small- to medium-sized businesses (SMBs) are targeted by 64% of all cyberattacks, and 62% of them admit lacking in-house expertise to deal with security issues. Now technology solution providers (TSPs) are a prime target. Enter ConnectWise Cybersecurity Management (formerly ConnectWise Fortify) — the advanced cybersecurity solution you need to deliver the managed detection and response protection your clients require. Whether you’re talking to prospects or clients, we provide you with the right insights and data to support your cybersecurity conversation. From client-facing reports to technical guidance, we reduce the noise by guiding you through what’s really needed to demonstrate the value of enhanced strategy.
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miniABS
miniABS (mini Absolute Breast Cancer Subtyper)
miniABS (mini Absolute Breast Cancer Subtyper) is an absolute, single-sample subtype classifier for breast cancer using Random Forest model of pairwise gene expression ratios (PGER) among 11 functional genes. With a systematic gene selection and reduction step, we aimed to minimize the size of gene set without losing a functional interpretability of the classifier. We validated the model performance using a large, heterogeneous cohort that consists of multiple public datasets across four... -
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reditools
RNA editing detection by NGS data
... been linked to a variety of human diseases including neurological and neurodegenerative disorders or cancer. NGS technologies offer a unique opportunity to investigate RNA editing. REDItools are simple python scripts conceived to investigate RNA editing at large-scale. REDItools are now hosted at https://github.com/BioinfoUNIBA/REDItools -
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novoBreak
Robust detection of somatic structural breakpoints in cancer genomes
novoBreak is a tool used in cancer genomic studies to discover SV (both somatic and germline) breakpoints. It can report accurate breakpoints of Deletions (DEL), Duplications (DUP), Inversions (INV) and Translocations (TRA) (you should consider some of them are mobile elements insertions or templated insertions). For novel insertions, we may only report the breakpoints but not the inserted sequence. Please forget about novel insertions at the moment. We will work on that later... -
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E2F1Map
Logic based simulations of E2F1 regulatory core for disease signatures
We provide comprehensive molecular interaction map of E2F1 transcription factor in tumor progression and metastasis. We provide various scripts, boolean based models to identify molecular signatures for predicting EMT phenotype in bladder and breast cancer model. -
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As your users rely more and more on Cloud and Internet-based technologies, reliable internet connectivity becomes more and more important to your business. With Bigleaf’s proven SD-WAN architecture, groundbreaking AI, and DDoS attack mitigation, you can finally deliver the reliable internet connectivity your business needs without the limitations of traditional networking platforms. Bigleaf’s Cloud Access Network and plug-and-play router allow for limitless control to and from anywhere your traffic needs to go. Bigleaf’s self-driving AI automatically identifies and adapts to any changing circuit conditions and traffic needs—addressing issues before they impact your users. Bigleaf puts you in the driver’s seat of every complaint and support call with full-path traffic and network performance data, delivered as actionable insights, reports, and alerts.
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Gidac
A web-based healthcare record manager
Gidac is a web-based tool that helps medical practictioners to manage healthcare record data ralated to diagnosis of breast cancer by providing Dicom files manipulation, HL7-compliant files import/export, filtred searches, statistics and other features. -
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SCNVSim
SCNVSim, a tool to simulate somatic CNV and Strucuture Variants
... points, which are essential for developing and evaluating somatic CNV and SV detection methods in cancer genomics studies. -
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Featureextraction
Feature Extraction: Fractal, Statistical, Geostatistical, Succolarity
The objective of this project is to find in the literature the best feature extractors related to the detection and diagnosis of disease in the breast, and implement them in order to make it open to research groups worldwide. The features will be available as an API (Application Programming Interface) in Java. -
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CupidTool
Cupid: simultaneous reconstruction of miRNA-target and ceRNA networks
Chiu et. al., Genome Research 2014 Cupid is a method for simultaneous prediction of miRNA-target interactions and their mediated competitive endogenous RNA (ceRNA) interactions. We showed that our integrative approach significantly improves on miRNA-target prediction accuracy as assessed by both mRNA and protein level measurements in breast cancer cell lines. Cupid is implemented in 3 steps: Step 1: re-evaluate candidate miRNA binding sites in 3’ UTRs, as inferred by TargetScan... -
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endo-MCML
MC model of Endoscopic Optical Spectroscopy for tubular organ
We present a Monte Carlo static light migration model (Endo-MCML) to simulate endoscopic optical spectroscopy for tubular organs such as esophagus and colon or organs lying behind tubular organs like prostate. Differ from the well-known multi-layered slab tissue model (MCML), our model employs multi-layered hollow cylinder which emitting and receiving light both from the inner boundary to meet the conditions of endoscopy. Inhomogeneous sphere can also be added in tissue layers to model cancer... -
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DRAMMS
A Deformable Medical Image Registration Toolbox
DRAMMS is a software package designed for 2D-to-2D and 3D-to-3D deformable medical image registration tasks. Released by Section of Biomedical Image Analysis (SBIA) at the University of Pennsylvania. Some typical applications of DRAMMS include, -- Cross-subject registration of the same organ (can be brain, breast, cardiac, etc); -- Mono- and Multi-modality registration (MRI, CT, histology); -- Longitudinal registration (pediatric brain growth, cancer development, mouse brain... -
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DOTS-Finder
Driver Oncogenes and Tumor Suppressors Finder
A key challenge in the analysis of cancer genomes is the identification of driver genes from the vast number of mutations present in a cohort of patients. DOTS-Finder, is a new tool which allows the detection of driver genes through the sequential application of functional and frequentist approaches, and is specifically tailored to the analysis of few tumor samples. We have identified driver genes in the genomic data of 34 tumor types derived from existing exploratory projects... -
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GLProbs
GLProbs: Aligning multiple sequences adaptively
... the best scores in almost all testings. We have also evaluated the practicability of the alignments of GLProbs by applying the tool to three biological applications, namely phylogenetic trees construction, protein secondary structure prediction and the detection of high risk members for cervical cancer in the HPV-E6 family, and the results are very encouraging. -
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FishingCNV
Copy number variation (CNV) detection in exome sequencing data
FishingCNV, a software tool developed at McGill University, is a tool for comprehensive analysis of rare copy number variations in high-throughput exome sequencing data. The inputs are standard coverage files produced by Genome Analysis ToolKit (GATK), and the output is a file containing putative CNVs. The program comes in 2 different releases * GUI version (FishingCNV_X.X.X.zip) * Command line version (FishingCNV_X.X_pipeline) Browse through our files to find the different releases. -
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FluoJ
Fluorescence microscopy image analysis tool
... and apoptosis in cancer cells. This results were achieved providing a customizable environment for particles detection, measurement and classification. A wide number of predefined features can be used to characterize fluorescent specimens (e.g. area, circularity, brightness, etc), and new descriptors can be easily added. Once configured, software can be trained to automatically classify particles or used directly for automatic image processing. -
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Breast Cancer Diagnosis System
System diagnosing breast cancer in mammograms
'BREAST CANCER DIAGNOSIS SYSTEM' is concerned about the development of a system that can identify abnormal growth of cells in breast tissue and suggest further pathological test, if necessary. The objective of the system is to help the diagnosis process of breast cancer. Breast cancer is one of the major causes of death among women. Small clusters of micro calcifications appearing as collection of white spots on mammograms show an early warning of breast cancer. We compare normal breast tissue... -
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BenchRelSurv
Using relative survival measures for benchmarks
Macros introduce a methodology for the cross-sectional and longitudinal assessment of outcome-oriented health services research in countries, states, and districts using breast cancer as an example. The implemented algorithms and the results of two macros (SAS) demonstrate how aggregated data sources can be used for external quality assurance purposes. Comparisons of health care quality of cancer screening programs and therapeutic interventions via the estimation of five indices are delivered... -
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BCP
NGS analysis tool
BCP is a command-line tool ideated to analyze NGS data, also offering a wrapper for some common NGS software, including Fastx and Samtools. It is oriented mainly towards targeted resequencing experiments, with a set of functions for general purposes. BCP also includes a function for breast cancer risk estimation, based on the Gail model, using both clinical and genome data. -
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ORganic Virtual Library (ORVIL) Program
ORganic VIrtual Library (ORVIL)
... affecting the entire backbone of the molecule enabling minimum molecular complexities. Its particular features are its simplicity to use, portable SMILES format and high speed of library construction. Benchmarking of Tamoxifen (drug for breast cancer) was performed which revealed a compound having similar architecture of known drug analogue, Toremifene. You can access the abstract and full text article here : http://indianjournals.com/ijor.aspx?target=ijor:ijaritac&volume=2&issue=2&article=006 -
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This project will develop standardized data formats and tools to facilitate sharing data between agent-based, multicellular models. The data format, postprocessing code, and visualisation tools have been successfully used for breast cancer modeling. This project has been superseded by the MultiCellDS project as of 2014 -- http://MultiCellDS.org
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Breast Cancer Tissue Bank, Australia has developed eAuditor, a plugin for Caisis 5.0, used as data entry auditing and quality assurance module. More information about Caisis can be found on www.caisis.org.