Search Results for "correlation" - Page 4
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Showing 175 open source projects for "correlation"
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JPIV
Particle Image Velocimetry
JPIV is a platform independent, graphical stand-alone application for Particle Image Velocimetry (PIV) written in Java. PIV is an optical technique for measuring fluid flow velocities. JPIV moved to GitHub. Please visit us at: https://eguvep.github.io/jpiv/ -
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Riot search
Go Open Source, Distributed, Simple and efficient Search Engine
...Support Chinese word segmentation (use gse word segmentation package concurrent word, speed 27MB / s). Support the calculation of the keyword in the text close to the distance（token proximity). Support calculation BM25 correlation. Support custom scoring field and scoring rules. Support add online, delete index. Support heartbeat. Support multiple persistent storage. Support distributed index and search. Can be achieved distributed index and search. Look at Word segmentation rules. -
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canova
Efficient Test for Nonlinear Dependence of Two Continuous Variables
...CANOVA is efficient in testing nonlinear correlation and has its own advantages in real data applications. -
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MethyMer
Design of specific primer combinations for bisulfite sequencing
...SpG islands) and includes specificity test (based on bowtie alignment against bisulfite-treated genome). It also incorporates TCGA CpG methylation (microarrays) and gene expression (RNA-Seq) data, as well as methylation-expression correlation analysis results for 20 human cancer types. ENCODE genome regions annotation data are also integrated in MethyMer -
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datasw
datasw, a tool for rapid processing of HPLC-SAXS data.
Small-angle X-ray scattering (SAXS) in solution is a common low-resolution method which can efficiently complement high-resolution information obtained by crystallography or NMR. Sample monodispersity is key to reliable SAXS data interpretation and model building. Beamline setups with inline high-performance liquid chromatography (HPLC) are particularly useful for accurate profiling of heterogeneous samples. The program DATASW performs averaging of individual data frames from HPLC-SAXS... -
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ECO
Matlab implementation of the ECO tracker
ECO (Efficient Convolution Operators for Tracking) is a high-performance object tracking algorithm developed by Martin Danelljan and collaborators. It is based on discriminative correlation filters and designed to handle appearance changes, occlusions, and scale variations in visual object tracking tasks. The code provides a MATLAB implementation of the ECO and ECO-HC (high-speed) variants and was one of the top performers on multiple visual tracking benchmarks. -
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...We focus on a particular kind of conversation joining, which we call blind-date, where a client may join a conversation among multiple parties in an asynchronous and completely transparent way. Indeed, the client can join the conversation without knowing any information about it in advance. More specifically, we show that the correlation mechanism provided by orchestration languages enables the blind-date conversation joining strategy. To demonstrate the feasibility of the approach, we provide an implementation of this strategy by using the standard orchestration language WS-BPEL. Moreover, to clarify the runtime effect of the blind-date joining, we formally describe its behaviour by resorting to COWS, a process calculus specifically designed for modelling service-oriented applications.
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QSdpR
Viral Quasispecies Reconstruction software based on QSdpR algorithm
This is a viral quasispecies reconstruction software for quasispecies assembly problem on mRNA viruses, which is based on a correlation clustering approach and uses semidefinite optimization framework. The software accepts a reference genome, a NGS read set aligned to this reference and set of SNP locations in the form of a vcf file and outputs an optimal set of reconstructed species genomes which describes the underlying viral population. -
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AlienVault OSSIM
Open Source SIEM
OSSIM, AlienVault’s Open Source Security Information and Event Management (SIEM) product, provides event collection, normalization and correlation. For more advanced functionality, AlienVault Unified Security Management (USM) builds on OSSIM with these additional capabilities: * Log management * Advanced threat detection with a continuously updated library of pre-built correlation rules * Actionable threat intelligence updates from AlienVault Labs Security Research Team * Rich analytics dashboards and data visualization -
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Crosshub
Multi-way analysis of The Cancer Genome Atlas (TCGA) project datasets
Crosshub enables multi-way analysis of RNA-Seq, miRNA-Seq and methylome data of The Cancer Genome Atlas (TCGA) project: 1. differential expression analysis (genes, alternative transcripts and miRNA) 2. regulatory miRNA prediction (TargetScan, DIANA microT, mirSVR, PicTar, miRTarBase + co-expression) 3. regulatory TF prediction (ENCODE ChIP-Seq + co-expression) 4. methylation profiling analysis 5. RNA-Seq vs. clinical (TNM, stage, follow-up) correlation analysis Generates Excel summaries. For details, see the manual or article G.S. Krasnov et al. NAR 2016, Pubmed ID: 26773058 -
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JStats
JStats is a Java application/applet for statistical testing.
...The following tests are supported: * Parametric tests: T-test, ANOVA, Repeated Measures ANOVA * Non-parametric tests: Wilcoxon Rank-Sum, Wilcoxon Signed-Ranks, Kruskal-Wallis, Friedman * Check if datasets are normally distributed: Jarque-Bera, Shapiro-Wilk * Check if datasets have equal variances: F-test, Bartlett's test, John, Nagao and Sugiura's test * Correlation: Correlation coefficient, Spearman Rank correlation, linear regression * Confidence intervals test * Outliers: Generalized Extreme Studentized (ESD) test, outliers in ANOVA The latest version is available as applet on http://aiguy.org/Statistics.html -
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PcapsE-OS X is a wrapper of tcpreplay directly integrated on Mac OS X Mavericks 10.9.3 for the execution of caps files that generate simulated malware traffic to test IDS Mac OS X based or redirecting simulated malware traffic on the interface of the IDS to other devices that perform correlation of events. Options:(1) Chat (2) Unix (3) Microsoft (4) Mac OS X (5) Network (6) DHCP (7) Firewalls (8) Routers (9) Proxy (10) Switches (11) HTTP (12) HTTPS (13) DNS (14) SW (15) Nessus (16) Tacacs+ (17) Vmware (18) Backdoors (19) Citrix (20) Mail (21) P2P (22) SQL (23) Web (24) XSS (25) Exploits (26) Xprobe (27) Nmap (28) Telnet (29) SSH (30) FTP (31) Vnc (32) Radius (33) Tor (34) Malware (35) DoS (36) Botnet (37) Openssl (38) Run cap (39) Malware News (40) Updates 2013-2014 pcaps (41) Updates 2015 pcaps.
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LightPCC
Parallel pairwise correlation computation on Intel Xeon Phi clusters
The first parallel and distributed library for pairwise correlation/dependence computation on Intel Xeon Phi clusters. This library is written in C++ template classes and achieves high speed by exploring the SIMD-instruction-level and thread-level parallelism within Xeon Phis as well as accelerator-level parallelism among multiple Xeon Phis. To facilitate balanced workload distribution, we have proposed a general framework for symmetric all-pairs computation by building provable bijective functions between job identifier and coordinate space for the first time. -
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A Matlab software routine to perform Principal Component Analysis using Covariance, Correlation or Comedian as the criterion. Though, initially developed for experiments related to fretting wear but can be effectively used to interpret experimental data from any field. The attached files contain source code as well as a sample MATLAB (.mat) data file of 13 variables. It could be replaced to the data file of your choice.
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...Community profiling is conceptually similar to the phylogenetic profiling approach to functional prediction, however with fundamental differences. This package provides different profile construction methods and correlation metrics, which we have shown are important for optimizing the performance of this new approach. Please refer to our paper for details of the algorithm: Dazhi Jiao, Wontack Han and Yuzhen Ye. Functional association prediction by community profiling. Methods, 2017
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AKtoolbox
Matlab Toolbox for coevolution analysis of multiple sequence alignment
...At present, co-evolution methods available in this package are Statistical Coupling Analysis (SCA), Explicit Likelihood of Subset Covariance (ELSC), Mutual Information (MI), Observed Minus Expected Square method (OMES), McLanhlan Based Substitution Correlation (MCBASC), Direct-coupling analysis (DCA) and logR. Enclosed in this package is also an archive of different Bioinformatics matrices. -
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Volterra2.0
Volterra series Identification Tool
...This feature reduces the identification noise on lower order kernels and improve the "resolution" on higher order kernels. For reference see: Simone Orcioni. Improving the approximation ability of Volterra series identified with a cross-correlation method. DOI:10.1007/s11071-014-1631-7. pp.2861-2869. In NONLINEAR DYNAMICS - ISSN:0924-090X vol. 78 (4) 2014. -
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Particle Correlation Analysis
Simulation program
...Axial hologram is reconstructed by numerical back propagation of the wavefront to the first layer of volume. Further, two adjacent layers with particles are obtained. These layers are subsequently compared using the correlation function. It is highly recommended to use default parameters of the program, only changing N, Np, D, ∆z and the distribution regimes. You can see supporting information in Specification of the program.docx -
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Buridan
Tracker for buridan experiments, and analysis for trajectory data
Buritrack is a program to track individual Drosophila fruit flies online with any camera as they walk in Buridan's paradigm. Available for Macs and PCs. The program extracts the coordinate locations of the fly and stores them in a text file. CeTrAn: centroid trajectory analysis: Tools written in R to analyze the flies' trajectories. Other types of trajectories may also be analyzed using the software. -
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A complete OpenSource Network Management System Is SNMP-Standard Oriented (tested on Cisco and Linux). It Integrates Syslog, Tacacs, RRDtool (Performance Graphs), Maps, Traps, TFTP, Autodiscovery, Sound Alerts, AAA, Modular and Extensible.
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lxnstack
A program to align and stack astronomical images.
Lxnstack is a program designed to align and stack astronomical images (both planetary and deep-sky). The features of latest version are: * Several stacking methods (average, median, sigma-clipping, ...) * Two automatic align method: align-points; phase correlation, * One manual align method. * sub-pixel precision (0.1 pixel for phase correlation and 0.01 pixel for manual alignment). * Automatic image derotation. * FITS file support (by installing the python2 package 'astropy') * Hot pixels suppression algorithm * CR2 files native support * Can load/save video * Grayscale RAW image support * Editing of result image's levels... -
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deconvolv
deconvolv: convolution and deconvolution of WAV files
deconvolv: convolution and deconvolution of WAV files Supported signal processing functions: correlation, convolution, de-convolution, convolution with Hilbert transformation, de-convolution with Hilbert transformation Copyright (c) 2008-2016 by Klaus Michael Indlekofer. All rights reserved. Note: Special restrictions apply. See disclaimers below and within the distribution. (We are not affiliated in any way with companies/persons mentioned above. -
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CorReactive
Event correlation engine with reactive facilities
Correlation engine based on Esper library which can be used together with Logstash. Please read FAQ http://sourceforge.net/p/correactive/wiki/FAQ/ -
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DE-HEoC
DE-based Weight Optimisation for Heterogeneous Ensemble
We propose the use of Differential Evolution algorithm for the weight adjustment of base classifiers used in weighted voting heterogeneous ensemble of classifier. Average Matthews Correlation Coefficient (MCC) score, calculated over 10-fold cross-validation, has been used as the measure of quality of an ensemble. DE/rand/1/bin algorithm has been utilised to maximize the average MCC score calculated using 10-fold cross-validation on training dataset. The voting weights of base classifiers are optimized for the heterogeneous ensemble of classifiers aiming to attain better generalization performances on testing datasets. -
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eTests
Formative evaluation platform
eTests is a PHP/MySQL web-based platform allowing to set formative evaluations using multiple choice questions. It has been developed during a Phd in education at the University of Namur, Belgium. To the students it offers feedback and detailed results to compare with pairs. To teachers it offers a way to analyze questions, validate them, follow the classroom trends of answers, edit questions, surveys, contextualize results regarding to studies sections, period of the year, etc. This...