Search Results for "correlation"
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Showing 200 open source projects for "correlation"
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Talend Open Studio for Data Quality
Map your path to clean data with an open source data profiling tool.
Map your path to clean data with Open Studio for Data Quality, the leading open source data profiling tool. Open Studio for Data Quality easily connects to hundreds of data sources and generates analysis to help define the next steps to clean data. Evaluate data quality against custom-defined thresholds, and measure conformance to internal standards such as SKU or external standards such as postal codes. Find out how to connect data with fuzzy matching or correlation analytics. Millions... -
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BioXTAS RAW
Processing and analysis of Small Angle X-ray Scattering (SAXS) data.
BioXTAS RAW is a program for analysis of Small-Angle X-ray Scattering (SAXS) data. The software enables: creation of 1D scattering profiles from 2D detector images, standard data operations such as averaging and subtraction, analysis of radius of gyration (Rg) and molecular weight, and advanced analysis using GNOM and DAMMIF as well as electron density reconstructions using DENSS. It also allows easy processing of inline SEC-SAXS data and data deconvolution using the evolving factor analysis... -
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R packages (maintained by YJLEE)
R packages for PK/PD modeling , BE/BA, drug stability, ivivc, etc.
These R packages are developed for data analysis of PK/PD modeling & simulation, bioequivalence/bioavailability (BE/BA), drug stability, in-vitro and in-vivo correlation (ivivc), as well as therapeutic drug monitoring (TDM). -
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ViralPlaque
A fast, open-source and versatile ImageJ macro for the automated dete
Plaque assay has been used for a long time to determine infectious titers. We present ViralPlaque, a fast, open-source and versatile ImageJ macro for the automated determination of viral plaque dimensions from digital images. Also, a machine learning plugin is integrated in the analysis algorithm for adaptation of ViralPlaque to the user’s needs and experimental conditions. A high correlation between manual and automated measurements of plaque dimensions was demonstrated. This macro... -
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Vision nmap's CPE to CVE conversor
Nmap's XML result parse and NVD's CPE correlation to search CVE.
Nmap's XML result parse and NVD's CPE correlation to search CVE. https://github.com/CoolerVoid/Vision2 -
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YeastpRofileSpearman
Software to calculate profiles around TSS and TTS of yeast mRNAs
YeastpRofileSpearman is a portable Windows form application, written in C#, to compute the profile of a genomic variable around transcription start (TSS) and termination (TTS) sites of yeast mRNAs. It is variation of the software application YeastpRofile (https://sourceforge.net/projects/yeastprofile/) in which Spearman’s rank correlation coefficient (Rs) is computed in place of Pearson correlation coefficient. The profile is obtained by calculating the genome-wide Rs between the genomic... -
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METATEA
For 16S gut micriome studies at sequence level and more in the future
METATEA is a toolbox for analysis of 16S sequences at sequence level and detection of mutually exclusive relationships. METATEA has three major advantages: (1) analyses at sequence level generally coincided with and outperformed the results at higher taxonomic levels; (2) analyses using exclusive correlation coefficients can enable us to easily detect putative probiotic bacteria against pathogens and to better understand the relationships between bacterial diversity and certain bacteria like K... -
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GenoCline
GenoCline is a free Java software for genetic cline analysis
Identification of clines from allele frequency or genome-wide databases. Angular transformation. Sigmoid function. Parameterization of a cline: orientation, Pearson’s product-moment correlation coefficient, linear and sigmoid regression and coefficient of determination. Graphical representation of the cline. Confidence limits. Spatial autocorrelation. Moran's index. Isolation by distance. Exponential regression. Correlation Fst/Distance. Centroid method. Cline's expected vs. predicted... -
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CAMPARI
Software for molecular simulations and trajectory analysis
We are proud to introduce version 4 of CAMPARI. Maintaining the philosophy introduced with V3 to speed up (almost) everything with the help of OpenMP (threads parallelism), we have added a number of new algorithms from the recent literature, most notably an entire module dealing with small molecules of arbitrary chemistry for applications in computational docking and drug design. Naturally, CAMPARI continues to provide the reference implementation of the ABSINTH force field paradigm and... -
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Simple Event Correlator (SEC) is a lightweight event correlator for network management, log file monitoring, security management, fraud detection, and other tasks which involve event correlation.
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Statistics for MySQL
Add more statistical functions to MySQL.
"Statistics for MySQL" provides additional statistical functions (like Pearson's coefficient of correlation) which are missing in MySQL. DLLs for 32 and 64bit Windows as well as makefiles for Linux are available. -
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CT4AM
Tools for 3D image analysis of additively manufactured parts
CT4AM is a cross-platform toolkit for 3D-image processing in the domain of additive manufacturing for toolpath visualisation or correlation to tomographic data and related materials science. It is written in C++ and provides small, problem-specific applications for viewing, analysing and visualising of volumetric data from micro-CT scans with respect to the complex process parameters and characteristics of additive manufacturing. Moreover, data analysis and processing of G-code are key assets... -
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GENET-CNV
Integrated DNA copy number variation and gene expression analysis
The Boolean implication networks outperformed Bayesian networks, Pearson’s correlation networks, and other Boolean networks in constructing genome-scale co-expression networks evaluated with comprehensive biological pathways and Gene Ontology in MSigDB. References: Guo NL, Wan YW. Pathway-based identification of a smoking associated 6-gene signature predictive of lung cancer risk and survival. Artificial Intelligence in Medicine 2012 Jun;55(2):97-105. Ye Q, Singh S, Qian PR, Guo NL. Immune... -
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X-Itools: Email/Web Log Search Engine
Strong Email & Apache Log Analysis with Active Security Features
... interest given to it by a world wide Organization (United Nations). Module renamed "X-Itools ELSE", for "X-Itools E-mail Log Search Engine". Some features: Log analysis and correlation of Postfix and Exchange servers, statistics, policy manager, in-deep analysis, automated network graphs for e-mail tracing, CSV export... The Swiss knife of Messaging Admins. In 2015, X-Itools ELSE is no more limited to E-mail logs: Apache logs are also processed and related stats and dashboards will be there! -
Detect and respond to API threats and risk in real-time with Resurface continuous API scanning. Purpose-built for API data, Resurface captures complete request and response payloads (including GraphQL) to instantly see threats and failures. Get alerts on data breaches for zero-day detection and response.
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gsasnp2
PubMed ID: 29562348 / DOI: 10.1093/nar/gky175
* GSA-SNP2 is a successor of GSA-SNP (Nam et al. 2010, NAR web server issue). GSA-SNP2 accepts human GWAS summary data (rs numbers, p-values) or gene-wise p-values and outputs pathway genesets ‘enriched’ with genes associated with the given phenotype. It also provides both local and global protein interaction networks in the associated pathways. * Article: SYoon, HCTNguyen, YJYoo, JKim, BBaik, SKim, JKim, SKim, DNam, "Efficient pathway enrichment and network analysis of GWAS summary data... -
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ensemble-verification-system
A software tool for verifying ensemble forecasts
The Ensemble Verification System (EVS) is designed to verify ensemble forecasts of hydrologic and hydrometeorological variables, such as temperature, precipitation, and streamflow, issued at discrete forecast locations (points or areas). -
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EMAP
A Cloud-Edge Framework for EEG Monitoring and Real-time Anomaly Pred.
... 2020 (DAC 2020). In case of usage please refer to: B. S. Prabakaran, A. G. Jiménez, G. M. Martínez, M. Shafique, “EMAP: A Cloud-Edge Hybrid Framework for EEG Monitoring and Cross-Correlation Based Real-time Anomaly Prediction”, IEEE/ACM 57th Design Automation Conference (DAC), July, 2020, (Accepted). -
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TI2BioP allows mainly the calculation of topological indices (spectral moments) derived from inferred and artificial 2D structures of DNA, RNA and proteins being possible to carry out a structure-function correlation irrespective of sequence alignments. TI2BioP version 3.0 is a python platform with a graphical interface designed for Windows, Linux and Mac OS.
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This is fork of SegDSee - SEG-D/B viewer, originally by Segrey Pavlukhin (https://mail.dmng.ru/freeware/?lang=en), modified by Pavel Gridin
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Whonix
Whonix is an Anonymous Operating System.
THIS IS NOT WHONIX'S HOMEPAGE. Please go to: https://www.whonix.org/ (This is only Whonix's sourceforge must-have project page.) Whonix is an operating system focused on anonymity, privacy and security. It's based on the Tor anonymity network, Debian GNU/Linux and security by isolation. DNS leaks are impossible, and not even malware with root privileges can find out the user's real IP. Whonix consists of two parts: One solely runs Tor and acts as a gateway, which we call Whonix-Gateway.... -
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The ChIP-Seq software provides methods for the analysis of ChIP-seq data and other types of mass genome annotation data. The most common analysis tasks include positional correlation analysis, peak detection, and genome partitioning into signal-rich and signal-depleted regions.
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YeastpRofile
Software to calculate profiles around TSS and TTS of yeast mRNAs
YeastpRofile is a portable Windows form application, written in C#, to compute the profile of a genomic variable around transcription start (TSS) and termination (TTS) sites of yeast mRNAs. The profile is obtained by calculating the genome-wide Pearson correlation coefficient (R) between the genomic variable values and the TSS (or TTS) counts at incremental shifting of transcribed strand. The data of TSS and TTS counts used to compute the profiles were taken from the work of Pelechano et al. (1... -
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BNNPT
A powerful method for nonlinear dependence of two continuous variables
Testing dependence/correlation of two variables is one of the fundamental tasks in statistics. In this work, we proposed a powerful method for nonlinear dependence of two continuous variables (X and Y). We addressed this research question by using BNNPT (Bagging Nearest-Neighbor Prediction Test, software available at https://sourceforge.net/projects/bnnpt/). In the BNNPT framework, we first used the value of X to construct a bagging neighborhood structure. And then, we got the out of bag... -
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MPICorMat
Parallel tool to construct correlation similarity matrices
MPICorMat is a parallel tool to construct correlation similarity matrices as part of the procedure to generate gene co-expression networks. This tool takes as input a matrix with the expression values (a float value) for different genes observed from several samples. It is a parallelization of the first module of the RMTGenNet tool (https://github.com/spficklin/RMTGeneNet). RMTGeneNet users can exchange this CCM module by MPICorMat, benefit from its fast computation to generate the similarity...
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