AKtoolbox

AK Toolbox is a Matlab Toolbox for co-evolution analysis for protein Multiple Sequence Alignment (MSA) distributed under Simplified BSD License.

The aim of AK toolbox is to provide a set of Matlab functions, which are independent of Matlab Bioinforamtics Toolbox, for coevolution anaylsis for MSA. At present, co-evolution methods available in this package are Statistical Coupling Analysis (SCA), Explicit Likelihood of Subset Covariance (ELSC), Mutual Information (MI), Observed Minus Expected Square method (OMES), McLanhlan Based Substitution Correlation (MCBASC), Direct-coupling analysis (DCA) and logR. Enclosed in this package is also an archive of different Bioinformatics matrices.

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License

BSD License

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kad-ecoli Edited 2014-09-29

AK工具箱中文版主页 code.google.com/p/ak-toolbox

Additional Project Details

Intended Audience

Education

Programming Language

C, MATLAB

Related Categories

MATLAB Bio-Informatics Software, C Bio-Informatics Software

Registered

2013-09-18

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