Search Results for "parallel" - Page 27
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Showing 1481 open source projects for "parallel"
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SPARTA
Direct Simulation Monte Carlo (DSMC) Simulator
SPARTA is a parallel DSMC code for performing simulations of low-density gases in 2d or 3d. Particles advect through a hierarchical Cartesian grid that overlays the simulation box. The grid is used to group particles by grid cell for purposes of performing collisions and chemistry. Physical objects with triangulated surfaces can be embedded in the grid, creating cut and split grid cells. -
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TensorFlow-ZH
Chinese version of the official document of TensorFlow
The tensorflow-zh repository is a Chinese translation of the official TensorFlow documentation, organized to make the core guides, tutorials, and reference material accessible to Chinese speakers. It was initiated shortly after TensorFlow’s open-sourcing, with translation and proofreading contributions from a community of volunteers who aimed to bridge the language barrier for learners in China and other Mandarin communities. The repo mirrors the structure of the original English docs:... -
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NanoGLADIATOR
Real-time detection of copy number alterations from nanopore data.
...Nano-GLADIATOR (Nanopore Genomic aLterations AnD allelIc frAcTiOn pRedictor) is capable to perform CNVs/CNAs detection and allelic fraction prediction during the sequencing run ("On-line" mode for real time molecular karyotyping) and once the experiment is completed ("Off-line" mode, for parallel analysis of multiple samples). In "On-line" mode the tool must be launched simultaneously to a nanopore experiment so that, by exploiting the data flow generated during the sequencing process, it can perform real-time CNVs/CNAs detection. In "Off-line" mode Nano-GLADIATOR can be used to perform parallelized analysis of multiple runs at once for the identification of germline CNVs and somatic CNAs. -
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bashful
Use a yaml file to stitch together commands and bash snippits
bashful is a command-line tool written in Go that allows you to define your build, automation or scripting workflow declaratively in YAML and have tasks executed in either series or parallel, with pretty progress output, logging, error handling, and orchestration instead of manually writing large bash scripts. The idea is that your bash automation should be “quiet and shy-like” rather than verbose and messy, so bashful provides a structured way to describe tasks (commands, downloads, nested operations) in a YAML file, and then run them with a nice terminal UI showing progress bars, logs, ETAs, etc. ... -
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As of August 2018 Spheral++ has moved to Github -- please see the current repository at https://github.com/jmikeowen/spheral We are leaving a frozen version here on SourceForge for historical reasons. Spheral++ provides a steerable parallel environment for performing coupled hydrodynamical & gravitational numerical simulations. Hydrodynamics and gravity are modelled using particle based methods (SPH and N-Body).
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ndpar
N-dimensional parallel functions package for octave
ndpar_*fun are the par*fun from package parallel 2.2.0 extended in order to handle N-dimensional arrays as input and output. Hope it will eventually make it to the parallel package, once its stability is proved. See also package parallel, maintained by Olaf Till -
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Universe Starter Agent
A starter agent that can solve a number of universe environments
...Under the hood, this starter agent implements a version of the A3C (Asynchronous Advantage Actor-Critic) algorithm, adapted for the specific challenges of Universe environments (e.g., network latency, VNC streaming, asynchronous observations). The repo includes modules like train.py, worker.py, model.py, a3c.py, and envs.py to support training, parallel worker management, policy/critics, and environment wrappers. -
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A framework to run MATLAB programs as batch jobs. Features a structured input description, integrity constraints and GUI.Independent parts of a job can execute in parallel on a cluster computer. Developed at Freiburg Brain Imaging (FBI) - http://fbi.uniklinik-freiburg.de/
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unix_to_mac_os
Portable Collection of Unix Utilities to MAC OS X
Portable Collection of Unix Utilities to MAC OS X : aria2 axel coreutils findutils fping grep gzip hexedit lftp mawk msmtp mutt ncftp ngrep nmap p7zip parallel pv rsync rtorrent sed tar unrar wdiff wget wput zsync Watch https://youtu.be/l5NlyoCoFCQ for usage instructions. -
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flickrit
Upload images to Flickr.com in various ways
...The directory name and all words in a filename are converted to "tags". Optionally, additional tags can be added manually to all the image files being uploaded. The upload script can be executed multiple times simultaneously to parallel the process. -
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FreeFileSync
Free data backup software to synchronize files and folders
FreeFileSync is a free Open Source software that helps you synchronize files and synchronize folders for Windows, Linux and macOS. It is designed to save your time setting up and running data backups while having nice visual feedback along the way. _______________________________________________________________ DOWNLOAD LINKS (official homepage): https://freefilesync.org/ -
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Implementation of RC4 Algorithm to be executed in parallel threads using Java's standard libraries for parallel executions. Wanted to check the performance of RC4 in different hardware platforms. This is the code base related to the following research paper: http://www.ijcaonline.org/archives/volume60/number16/9780-4424
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Scrollout F1
An easy-to-use anti-spam email gateway
• Designed for Linux and Windows email system administrators, Scrollout F1 is an easy to use, already adjusted email firewall (gateway) offering free anti-spam and anti-virus protection aiming to secure existing email servers, old or new, such as Microsoft Exchange, Lotus Domino, Postfix, Exim, Sendmail, Qmail and others. • Built-in multilayer security levels make configuration effort equal to a car radio. • It combines simplicity with effective protection using powerful open source... -
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HIGH-THROUGHPUT TABULAR DATA PROCESSOR (HTDP) is Java application that is intended to facilitate data exploration and reduction tasks in large text files resulting from high throughput technologies, e.g. massively parallel sequencing or microarrays. The software has been optimized for microarray and deep parallel sequencing data, however it can accept any character delimited tabular data sets. HTDP can also import, process and convert Variant Call Format (VCF) files ver. 4.0, 4.1 and 4.2 (http://samtools.github.io/hts-specs/VCFv4.2.pdf). HTDP provides quick filtering functionality and can process data consisting of single or multiple input files. ...
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OpenHCPP
A Directive-Based Heterogeneous Parallel Programming Framework
OpenHCPP is a high-level directive-based parallel programming framework. -
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xc3sprog is a suite of utilities for programming Xilinx FPGAs, CPLDs, and EEPROMs with the Xilinx Parallel Cable and other JTAG adapters under linux. Originally based on code written by Andrew Rogers (http://www.rogerstech.co.uk/ ).
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popt4jlib
Parallel Optimization Library for Java
...A fast parallel implementation of the network simplex method, and some full-fledged parallel/distributed MIP solvers will be added in the next version. In general, emphasis is given in improving the efficiency of the algorithms in shared-memory models via java threads, since multi-core machines are so wide-spread today. -
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SPar: Stream Parallelism in Multi-Cores
An Embedded C++ Domain-Specific Language
SPar is an internal C++ Domain-Specific Language (DSL) suitable to model and implement classical stream parallel patterns. The DSL uses standard C++ attributes to introduce annotations tagging the notable components of stream parallel applications: stream sources and stream processing stages. Latest version can be downloaded from the SVN using the following command: svn checkout svn://svn.code.sf.net/p/spar-dsl-compiler/svn/ spar -
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SGA Conversion and Analysis Tool
Convert SGA format multimedia files to PNG and AVI format
This program is a utility for viewing, analyzing, and converting the data in SGA format multimedia files used by Digital Pictures in their games for the Sega Mega CD, Sega Super 32X, Sega Saturn, 3DO video game systems, and Windows PCs into formats that can be read by media player software on modern PCs. -
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Intel neon
Intel® Nervana™ reference deep learning framework
...The Intel Math Kernel Library takes advantages of the parallelization and vectorization capabilities of Intel Xeon and Xeon Phi systems. When hyperthreading is enabled on the system, we recommend the following KMP_AFFINITY setting to make sure parallel threads are 1:1 mapped to the available physical cores. -
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IPS Framework
A simple Python framework for loosely-coupled multiphysics simulations
...In addition to plasma physics, it is also being used in the engineering of batteries. One of the novel features of the IPS framework is its ability to support parallelism at multiple levels: components can launch individual parallel tasks, and also launch multiple tasks concurrently. The framework can execute multiple components concurrently, and even multiple simulations, all within the same pool of compute nodes. -
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ParaFEM
Parallel finite element analysis
ParaFEM is an open source platform for parallel finite element analysis. The source code and philosophy are documented in the text book Smith, Griffiths and Margetts, "Programming the Finite Element Method", 5th Edition, Wiley, 2014. The software is written in modern Fortran and uses MPI for message passing. -
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JennyNet
Java Network Layer for Server/Client Communication
Java Network Layer resting on TCP/IP is now developed by Wolfgang Keller, SF user "kse". This site is outdated and contains an old version of the software. I have given up developing this project and left all copyright to Wolfgang Keller. -
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BisSNP
Bisulfite-seq/NOMe-seq SNPs & cytosine methylation caller
Now in Github: https://github.com/dnaase/Bis-tools/tree/master/Bis-SNP BisSNP is a package based on the Genome Analysis Toolkit (GATK) map-reduce framework for genotyping in bisulfite treated massively parallel sequencing (Bisulfite-seq, NOMe-seq and RRBS) on Illumina platform. It uses bayesian inference with either manually specified or automatically estimated methylation probabilities of different cytosine context(not only CpG, CHH, CHG in Bisulfite-seq, but also GCH et.al. in other bisulfite treated sequencing) to determine genotypes and methylation levels simultaneously. ... -
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JThread - a OO, Java like threading library for C++ ! System independent OO architecture for thread and synchronising classes - separates between operating system independent interfaces and dependent implementations.
