Search Results for "algorithm" - Page 26
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Showing 1986 open source projects for "algorithm"
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erne
ERNE - Extended Randomized Numerical alignEr
We present ERNE (Extended Randomized Numerical alignEr), a short string alignment package whose goal is to provide an all-inclusive set of tools to handle short (NGS-like) reads. ERNE comprises ERNE-FILTER (read trimming and continamination filtering), ERNE-MAP (core alignment tool/algorithm), ERNE-BS5 (bisulfite treated reads aligner), and ERNE-PMAP/ERNE-PBS5 (distributed versions of the aligners), -
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2D Terrain Generator & AI Library
A user-expandable library for making maps for tactical strategy games
A terrain generator and artificial intelligence API, expandable through DLL files ((AI only, for now)) and text files ((terrain only)), that allows for the generation of maps for 2D tactical strategy games in the vein of Advance Wars and Fire Emblem. The library incorporates the SFML library. At the project's completion, it will involve a three-stage terrain generation algorithm; Terrain Generation, Feature Generation, and Post-Generation, and will in turn generate the basic map... -
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Morpheus search algorithm
a mass spectrometry–based proteomics database search algorithm
Morpheus is a mass spectrometry–based proteomics database search algorithm designed from the ground up for high-resolution tandem mass spectra. We have discovered that for high-resolution MS/MS, simple spectrum preprocessing and scoring performs superior to more complex algorithms originally developed for low-resolution MS/MS, such as Sequest, Mascot, and OMSSA. Morpheus is also very fast—up to nearly 5 times faster than OMSSA for large human datasets. It is written in C# and is available open... -
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This project consists of various implementations of the Graphplan algorithm. At the moment we have two implementations of Graphplan: * Emplan - A C++ implementation for Linux, Windows and MacOS X * JavaGP - A Java implementation
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theoEA_Code
genetic algorithm for optimizing planar optical antennas
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MSAProbs: Multiple Sequence Alignment
One of the most accurate multiple protein sequence aligners
MSAProbs is an open-source protein multiple sequence ailgnment algorithm, achieving the stastistically highest alignment accuracy on popular benchmarks: BALIBASE, PREFAB, SABMARK, OXBENCH, compared to ClustalW, MAFFT, MUSCLE, ProbCons and Probalign. -
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GLORIA
a reasoning engine for agents and games
This project is about implementing a logic-programming based, reasoning engine for an agent. We started with an implementation of the iff-proof procedures, by Kowalski and Fung, as an any-time algorithm written in Prolog. -
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skewer
A fast and sensitive adapter trimmer for illumina paired-end sequences
This program implements a novel dynamic programming algorithm dedicated to the task of adapter trimming and it is specially designed for processing illumina paired-end sequences. -
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Rootvole
a text parsing library that matches text with concepts.
For general processing of voice queries we developed a text parsing library named 'Rootvole' that can be used to match text with semantic concepts. The algorithm was implemented in Java and can be described as a form of a parsing expression grammar, where we generate the expressions to be detected beforehand by regular expressions and store them in a vocabulary. The central class is the parser class, which is instantiated as a series of vocabularies, simple text lists that describe tokens... -
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Primes
Calculate primes by using extremely fast sorting
This project considers the problem of calculating primes as a sorting problem. It includes the most efficient tree-based sorting algorithm that is possible and shows that finding a new prime can be done by sorting the differences between the previous primes in the right way. Unfortunately it has turned out that going this way is even more slowly than trying to find primes by brute force. So it can only be used as a test with heavy load for the sorting algorithm, which can be used for sorting... -
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ZORE is a syntax-based Chinese (Zh) ORE system, which can extract relations and semantic patterns from Chinese text. ZORE identifies relation candidates from auto- matically parsed dependency trees, and then extracts relations with their semantic patterns iteratively through a novel double propagation algorithm. Empirical results on two data sets show the effectiveness of the proposed system. This software source is under GPL (v.3), and a separate commercial license issued by the authors for non...
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This is a refactored C++ version of subroutine dqelg of QUADPACK, an implementation of the epsilon table extrapolation algorithm, originally written in Fortran 77. This version is expected to exactly reproduce the roundoff errors of dqelg. Declarations for standard-conforming Fortran bindings are also provided.
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lxnstack
A program to align and stack astronomical images.
...') * Hot pixels suppression algorithm * CR2 files native support * Can load/save video * Grayscale RAW image support * Editing of result image's levels. * Light curve generation -
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Password Keeper
manage your passwords in a secure way
.... Unimaginable. Password Keeper helps you to manage your passwords in a secure way. You can protect all your passwords with Password Keeper . You only have to remember one single master password to unlock the application when it starts only. your login and passwords are encrypted using the best and most secure encryption algorithm currently known (AES). -
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GA-EoC
GeneticAlgorithm-based search for Heterogeneous Ensemble Combinations
.... To enhance classification performances, we propose an ensemble of classifiers that combine the classification outputs of base classifiers using the simplest and largely used majority voting approach. Instead of creating the ensemble using all base classifiers, we have implemented a genetic algorithm (GA) to search for the best combination from heterogeneous base classifiers. The classification performances achieved by the proposed method method on the chosen datasets are promising. -
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Jafaran
Fast and more random implementations of java.util.Random.
Jafaran (Java Fast Random) provides fast, and for some more random, implementations of java.util.Random, with additional nextXXX() methods, and methods to retrieve and restore state. The names of implementations contain "Conc" (for concurrent) if they are thread-safe and non-blocking, or "Seq" (for sequential) if they are not thread-safe. Also provides an implementation of Ziggurat algorithm (based on J. A. Doornik paper, 2005), used by nextGaussian() methods of the provided... -
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jPainter
Java-based paint program using DDA, Bresenham and Circle algorithm
Java-based paint program using DDA, Bresenham and the Circle algorithm. It is meant to show the implementation of algorithms that are used to draw primitives. -
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Java DSA extensions
Java datastructures and algorithms extensions
DSA extensions contains classes similar in purpose to the classes provided in java.util. Currently, it contains sortable Lists and Maps, as well as a balanced binary search tree and a binary array search algorithm. -
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iCAS - An Illumina Clone Assembly System
An Illumina clone assembly system using SOAPdenovo and ABySS
Clone-by-clone sequencing, as a means of achieving high quality assemblies for large and complex genomes, continues to be of great relevance in the era of high throughput sequencing. However, assemblies obtained using current whole genome assemblers are often fragmented and sometimes have issues of genome completeness owing to different data characteristics introduced by multiplexed sequencing. With iCAS the data filtering process is based on a novel kmer frequency algorithm, resulting... -
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Parallel Quicksort with MPI
Parallel Quicksort with MPI
Sorting is used in human activities and devices like personal computers, smart phones, and it continues to play a crucial role in the development of recent technologies. The QuickSort algorithm has been known as one of the fastest and most efficient sorting algorithm. It was invented by C.A.R Hoare in 1961and is using the divide-and-conquer strategy for solving problems [3]. Its partitioning aspects make QuickSort amenable to parallelization using task parallelism. MPI is a message passing... -
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PortOpt
A portfolio-optimizer using Markowitz(1952) mean-variance model
... portfolio. In order to minimise the variance it internally uses QuadProg++, a library that implement the algorithm of Goldfarb and Idnani for the solution of a (convex) Quadratic Programming problem by means of an active-set dual method. This solution is very efficient as it allows to solve hundred of thousand of portfolio problems in seconds. PortOpt runs as a text/console tool so it can be easily used in your own scripts. -
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OPTPDT
OPTPDT is a family-based multi-SNP association test
OPTPDT is a family-based multi-SNP association test. A variable p-value threshold algorithm is used in the test to select an optimal subset of SNPs that has the strongest association signals. -
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Real's Ark SE Level Cap Modifier
Creates a Game.INI for increased level cap on ARK: Survival Evolved.
UPDATED: This program automates the process of increasing the your level cap in Ark: Survival Evolved. Just follow the instructions in the program and readme to create a new Game.ini. Unfortunately, you can not make more than 20,723 levels without changing the formula. (You can if you go in the source and change the "5i * i..." part to whatever formula you want. Steam Guide: http://steamcommunity.com/sharedfiles/filedetails/?id=533887324 EDIT: The Lower XP Dinos version makes less XP... -
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Caesar Cipher v1
Encrypt your messages with Caesar Cipher algorithm.
Encrypt your messages with Caesar Cipher algorithm. -
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vtrunkd
Network link bonding/trunking/aggregation and multichannel VPN daemon
vtrunkd - network link bonding and multichannel VPN. Vtrunkd is a Linux VPN daemon used to combine several connection paths into one aggregated channel. Features latency, reordering and jitter management, behaviour analysis optimizations for encapsulated protocols, bufferbloat control, packet redundancy, and multiple cpu cores utilization. Up to 30 heterogenous links bonding supported. Used for live streaming, LTE/3G/Wi-Fi link bonding. 32/64-bit, x86, MIPS and ARM supported. Supports python...
