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skewer

alpha

A fast and sensitive adapter trimmer for illumina paired-end sequences

5.0 Stars (1)
32 Downloads (This Week)
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Description

This program implements a novel dynamic programming algorithm dedicated to the task of adapter trimming and it is specially designed for processing illumina paired-end sequences.

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Categories

Bio-Informatics

Features

  • Detection and removal of adapter sequences
  • Insertion and deletion allowed in pattern matching
  • Targeted at Single End, Paired End (PE), and Long Mate Pair (LMP) reads
  • Demultiplexing of barcoded sequencing runs
  • Multi-threading support
  • Trimming based on phred quality scores
  • IUPAC characters for barcodes and adapters
  • Compressed input and output support

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User Reviews

  • 1 of 5 2 of 5 3 of 5 4 of 5 5 of 5

    Great solution for quality trimming and adapter clipping of Illumina seq data. Very fast and easy to run. Perfect for paired-end reads as it retains read ordering.

    Posted 08/05/2015
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Additional Project Details

Intended Audience

Science/Research

Programming Language

C++

Registered

2013-09-09

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