Open Source Java Data Visualization Software - Page 5

FMC will provide a Model-View-Controller architecture for developers to make Freality: an extensible metaverse, for gaming, socializing, exploration and pretty much everything under the virtual sun.

Fungus is a framework for distributed simulation by multi-agents. It uses a very modular architecture. A GUI is provided. In our model, everything is Agent. Even the environnement. You have an access to the communication's 'canals'.

GATA is a graphic alignment tool for comparative sequence analysis. It makes use of BLAST to graphically align two DNA sequences, creating box- line- box representations of window scored local alignments. GATA also displays extensive GFF gene annotation.

GMOL is an application designed to visualize genome structure in 3D. It allows users to view the genome structure at multiple scales, including: global, chromosome, loci, fiber, nucleosome, and nucleotide. This software was built upon the pre-existing Jmol package by Prof. Cheng's group. The software is developed in Prof. Jianlin Cheng's Bioinformatics, Data Mining and Machine Learning Laboratory in the Computer Science Department at the University of Missouri - Columbia, USA. The project is supported by the National Science Foundation (grant no. DBI1149224). If you use GMOL in your research, please cite: Nowotny, Jackson, Avery Wells, Oluwatosin Oluwadare, Lingfei Xu, Renzhi Cao, Tuan Trieu, Chenfeng He, and Jianlin Cheng. "GMOL: an interactive tool for 3D genome structure visualization." Scientific reports 6 (2016): 20802.

GUESS, or the Graph Exploration System, is a system and language for visualizing and manipulating graph structures and creating new visualization applications.

HiSee is a tool for visualizing high dimensional data using one of a variety of projection techniques. A graphical interface is provided for viewing and exploring the projected data.

Infomap is a Java component for displaying and manipulating nodal data. It gives the user the ability to visualize large graph or tree structures by means of expanding and collapsing portions of the structure and by easily zooming in and out.

JFunctionViewer is a simple and fast OpenSource function plotter. Since it is written in Java it is Platform independend and can even be run from inside a Browser.

JMicroPolygon is a project to provide polygon drawing and filling facilities for J2ME (MIDP 1.0 and 2.0) without relying on extension APIs.

JOELib/JOELib2 is a cheminformatics library which supports SMARTS substructure search, descriptor calculation, processing/filtering pipes, conversion of file formats, 100% pure Java, and interfaces to external programs (e.g. Ghemical) are available.

Java 3D Game SDK based on J2SE 1.4 and Java 3D 1.3. No native code is used, so this SDK should be portable to all operating systems, which provide the above SDKs. The SDK provides functions from initializing the window till model animating and renderin

The Java Vision Toolkit (JVT) is a Java Advanced Imaging GUI/library for machine vision and image processing applications. It provides a framework for machine vision and image processing algorithms for 2D and 3D images.

Ontology visualization plugin for Protege in an interactive 3D space.

PIVOT is a simple yet flexible visualization tool based on Circos (Krzywinski et al., 2009), which offers a fast and aesthetical visualization of data and information. The Protein Interaction Visualization and Observation Tool (PIVOT) was developed specifically for the visualization of protein interaction. It is difficult to spot the proteins that have an interaction when given a large list of proteins but with PIVOT, it is easy to identify the them at a glance. PIVOT displays an image showing all the proteins and draws a connection between proteins that have an interaction.

Relations RCP is a personal wiki style application for knowledge creation and management. Its use is the visualization of terms and concepts and the relations governing these items. Relations is implemented as Eclipse RCP application.

Simulation of star movements with great visualizations of flights through star fields.

ThunderGraph is another java charting library intended to draw 2D graphs. Additionally, it contains a package that presents a live component implementing zoomable, scrollable and 'hintable' graph. Written for JDK 1.1+, it may be used in MS IE applets.

VERDI is a flexible, efficient, and modular Java-based visualization software tool that is used to visualize multivariate four dimensional gridded environmental datasets such as those output by air quality models.

Visual Environment for Remote Virtual Exploration

Visual Turing Machine is a tool for visually designing Turing machines. This means no coding in abstract scripting languages, but simple point&click design. It uses the a..z symbol set, plus the "empty" # symbol, and also simulates an infinite tape.

Netsim is a mobile ad hoc network simulator targeted at large heterogeneous node configurations. It is written in Java and is easily extensible through its modular concept.

VISUAL is a program package for creating and running HMI (human machine interfaces) and SCADA or process visualization applications under LINUX. It enables you to control/operate a/many PLC controlled machine(s) through a computer

A project to create an interactive, scientifically-accurate 3D model of the HIV virus. Particularly intended for use in education.

The project aim is to create the 3D simulation of robot-arm which moves on three axis. It's based on real robot- dual arm that can solve Rubic Cube. It's gonna be implemented using openGL in Java Applet and will be awesome=)

An object oriented Java package that can be used to store 3-D graphs and perform various functions on them, arranging nodes with a spring embedder and generating VRML output. Visit http://vrmlgraph.i-scream.org.uk for documentation and examples.