Open Source Java Data Visualization Software - Page 7

ScreeningAssistant 2 is a modular software dedicated to perform various simple and advanced chemoinformatics analysis around chemical libraries.

Simbrain is a java-based neural network. It is no longer being hosted here. Most information and downloads are at the homepage, www.simbrain.net. The development page is http://code.google.com/p/simbrain/

Suvi is a Java-library for graph visualization and a framework for developing graph visualization algorithms.

This project extends a previous work on node link tree visualisation and interaction by providing visual clues on hidden structures. We adopt DOITree from Prefuse package (https://github.com/prefuse/Prefuse), a multi-focal tree layout algorithm, for exploring large hierarchical structures. Related publications: https://www.sciencedirect.com/science/article/pii/S1045926X1630009X https://ieeexplore.ieee.org/stamp/stamp.jsp?arnumber=6902871

VMS Draw provides general utilities (e.g. normalization, conversion, and other manipulations of several spectra at the same time) and a flexible graphical user interface (GUI) for an easy use by non-specialists which allows a seamless flow of information between experimentally and theoretically oriented researchers. Finally, it permits effective interactions with other electronic structure codes [e.g., nuclear magnetic resonance (NMR), microwave] even if Gaussian 16 offers the widest set of methods for computational spectroscopy.

i-sight is a scientific data visualization / plotting / mesh visualization software that can plot data fields, contours, streamlines (much like TecPlot), and also has a 3D mesh visualizer that can cut a mesh, perform shadow visualization and related stuf

jgnuplot is a Java library for interfacing with the gnuplot plotting package which outputs to X11, PostScript, PNG, GIF and other formats.

JLab is a visualization System for the c't Lab. The various modules (IO-Signaling, Frequency, Power Supply) can be viewed and controlled via a Java Swing Interface

AbuGraph is a freely available Java application for the layout and visualization of directed graphs. Bound to a TCP port, it supports dynamic graph creation receiving commands from a telnet console or another third party application.

BeamFlow is a scientific presentation and demonstration program for typical introductory physics problems involving electric, magnetic, and gravity fields in three dimensions. Real-time demonstration of the magnetic field around a wire, the gravity fields around rotating binary stars, and the electric field from multiple point charges are just some of the potential applications.

It uses two different solutions: - placing of circles closest to the center from the largest to smallest, see brianshaler on github https://github.com/brianshaler/Circle-Packing-in-Processing - simulation "real" world with use of a Java Physics Engine JBox2D, see http://www.jbox2d.org

** Deprecated ** Important! All of the software on this web site has been deprecated, and has not been maintained since 2014. All of this software is now being maintained on Github - and can be obtained from https://github.com/jpaulm . Changes and enhancements are still ongoing, and while older software should still work, newer features described in the literature will not be available in SourceForge. The old license was the Artistic license - the software is now in process of being converted to LGPL. This will gradually take place (on Github) over the next few months (in 2016). JavaFBP is now also on Maven.

A Java library and set of tools to quickly and easily manipulate graphs (set of nodes and edges) and dynamic graphs. The principal trait of this library is its ability to manage (create, edit, layout, display) continuously evolving graphs. The development of this project now takes place on Github. Visit the official Graphstream website at http://graphstream-project.org

Graph visualization using hyperbolic geometry (hyperbolic trees, but also general graphs). Applications cover web site structures, topic maps, organisational charts and wikis.

MicroArray Genome Imaging and Clustering Tool (MAGIC tool) is a platform-independant java program for analyzing MicroArray data (.tiff scans & .txt godlists) via graphs and clustering operations (including QT-clustering). http://www.bio.davidson.edu/magic

This plugin allow to visualize several e.g. gene expression values simultanously using pie charts. * Please cite http://www.biomedcentral.com/1752-0509/4/164 *

This is a tool for patent searching, downloading and analyzing. Analysis focuses on patent-families, citation-networks, assignee-networks , and inventor-networks.

ProteinShader is a molecular visualization tool that can produce illustrative renderings of proteins that approximate what an artist might create using pen and ink. This free platform-independent program is written in Java and OpenGL Shading Language.

SPIDR (Space Physics Interactive Data Resource) is a distributed database and application server network, built to select, visualize and model historical space weather data. SPIDR is a web-application and a grid of data mining web-services.

Application sharing software that allows individual windows to be replicated to other computers. Remote collaboration tool based on a modified VNC protocol. Its advantage is to keep some things, like email, private, while sharing other desktop apps.

The Shrimp suite provides interactive visualizations of graph-based data. Creole (Eclipse plug-in) visualizes Java source code. Jambalaya (Protege plug-in) visualizes ontologies (including OWL), & Stand-Alone Shrimp visualizes RSF/GXL/PRJ/PPRJ files.

Automata Based Programming Tool for implementing logic for J2SE, J2EE and Sybmian applications. Consists of Java FSM Framework and Eclipse Plugin parts. Plugin implements UML model editor, visual debugger, validator, compiler and interpreter for Eclipse

Cca-forum unifies the Common Component Architecture tools and tutorial. It includes the CCA specifications, the Ccaffeine framework for HPC, and related tools. These support multilanguage scientific and parallel computing.

Merging neuronal nets with attractor visualisation to show the unknown particle, which makes travel much faster. https://projects.zoho.com/portal/surfingjoomla#myworkcalendar

Zephyr is a script-driven experiment automation program that works various measurement instruments and actuators. It supports instruments from Agilent, Eco Physics, ICS Electronics, Keithley, Omega, Teledyne and other manufacturers. The script language is XML-based. Syntax highlighting is available. The source code is included in the distribution. Contact the project admin to get SVN access.