Open Source Java Data Visualization Software - Page 9

Researchers, Mathematicians and Enthusiasts. Download "Billiards Covers" to see the most current list of periodic paths in triangles. Download "Billiards Everything" to discover new periodic billiard paths, an unresolved problem from 1775! Follow "The Great Periodic Path Hunt" at gwtokarsky.github.io for the latest news. Email tokarsky@ualberta.ca for feedback.

Workbench for visualizing biological networks (regulatory, interaction, and metabolic). Can be used as a front-end for BNDB datawarehouses, but also as stand-alone tool.

Bloof is an infrastructure for analytical processing of version control data. The main distribution provides a GUI for visualizing the evolution of a software project. External tools can access Bloof via Java API and a XML result mechanism.

3D Building explorer

A Java program to enable users to comprehend the "Contraction and Convergence" model for reduction in carbon emissions as proposed by the Global Commons Institute. Intended primarily as a demo for government delegates at UN conferences

Support software for CRBS/NCMIR CCDB project

CEGA is a highly extendable layout plugin for Cytoscape based on an Evolutionary Algorithm. In contrast to other layout algorithms, CEGA lets users decide which features are important for the visualization of their graphs.

CHIVE provides an extensible framework on top of which software visualisation tool researchers can quickly develop tools that take advantage of the 3-Dimensional graph representations inbuilt in the framework or extend them to suit their own requirements

CIG-P is a higher order visualization tool for AP-MS which generates intuitive circular diagrams for visually appealing final representation of AP-MS data. CIG-P can be used to compare a) different AP-MS datasets of various baits or b) a particular bait under various perturbations (lenticular section CIG-P). The output of CIG-P is a simple and intuitively easy to grasp visualization of a complex dataset. Publication: CIG-P: Cicular Interaction Graph for Proteomics http://www.biomedcentral.com/1471-2105/15/344/ Previously known as PIVOT (Protein Interaction Visualization and Observation Tool)

Graphical editor for the Common Information Model (CIM) built on the Eclipse RCP and with EMF and GMF.

The Wildfire Management Tool (WMT) predicts the potential fire behavior of a wildland fire. WMT incorporates a 3D terrain viewer, the tenets of the Campbell Prediction System (CPS) and the Rothermel fire spread equations to depict fire behavior. WMT is used to adjust tactics & strategies to ensure the safety of firefighters and the effective use of firefighting resources. Requires Java 8 (included) - http://www.java.com/download

Goal of our project CSX (City Stats X) is to program a generic interface to visualize and present social data about a city. We will present this on the example of the city of Linz in Austria.

A math application written in Java. Its features include 2D and 3D graph plotting, scripting, user-defined variables and functions and skinnable GUI. This project is not maintained at the moment.

CallMesh is an eclipse plugin visualizing call graphs in java projects with the help of the zest toolkit. It allows easy navigation around you classes. Additionally, call graphs can be exported as dot-files as understood by graphvis.

This is a short C++/Java/C#/Python benchmark. Based on Paul Heckbert's sources. Thank you Paul!

The Cutting Edge CardSorting Solution.

The aim of the cardiac atlas project is to establish a structural and functional atlas of the heart. This project is funded by the NIH grant and led by the University of Auckland, New Zealand.

CartoReso intends to facilitate enterprise computer network mapping.

CAVOR is an engine for building apps that involve both graphic and text/numeric data. Primarily GIS is the initial focus, but consider also CAD, CASE, project management (eg PERT charts), and others. Built-in scripting, C API, also supports Tcl and Java.

A cellulary Automata.

Chaotic Attractors is a JAVA program to generate images of chaotic attractors. Chaotic attractors are used in chaos theory. Even though they have their seeds in science, they are very artistic. They are great as wallpaper, too.

A Java class library for visualizing quantitative data using two-dimensional category charts [pie, line, vertical bar, horizontal bar, scatter-plot (dot), combination, and overlay charts]. Charts are of type JComponent and BufferedImage.

A Java program to parse chemical names using IUPAC nomenclature. The output can be either a visualisation of the molecule, or in a form for other programs to use (e.g. CML).

Chipster is a biologist-friendly analysis software for high-throughput data. It contains over 200 analysis tools for next generation sequencing (NGS), microarray and proteomics data. Users can combine tools in automatic analysis workflows, which can be shared. Chipster's interactive visualizations allow users to select datapoints and create new gene lists. For NGS data Chipster contains a built-in genome browser, which highlights SNPs and automatically indexes BAM files and calculates coverage. Chipster’s ability to provide a biologist-friendly access to a powerful analysis platform is technically based on a desktop application user interface, a flexible distributed architecture, and the ability to integrate many types of analysis tools (command line, R/Bioconductor, Java, Web Services etc). The platform is generic and easily extendable to other areas, even beyond bioinformatics. For more information, please see http://chipster.csc.fi and http://genomebiology.com/1471-2164/12/