Open Source Data Analytics Tools - Page 14
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SNP-Analyzer
SNP-Analyzer
SNP-Analyzer is a tool for the efficient Analysis and management of Affymetrix SNP DMET Data analysis -
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SPRITE
Parallel SNP detection pipeline
SPRITE is an open-source software package providing a parallel implementation of the Single Nucleotide Polymorphisms (SNP) detection genomic data analysis workflow. It consists of three tools: PRUNE for read alignment, SAMPA for intermediate file processing, and PARSNIP for parallel SNP calling. -
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SafeUtils
110+ developer tools as native MacOS, Linux & Windows desktop apps.
Tools: https://safeutils.com/barcode-generator https://safeutils.com/color-picker https://safeutils.com/qr-code-generator https://safeutils.com/qr-code-scanner https://safeutils.com/word-counter https://safeutils.com/base-64-decoder https://safeutils.com/diff-checker https://safeutils.com/hex-to-ascii https://safeutils.com/json-formatter https://safeutils.com/lorem-ipsum-generator https://safeutils.com/random-generator https://safeutils.com/time-converter https://safeutils.com/xml-formatter https://safeutils.com/ascii-to-binary https://safeutils.com/ascii-to-hex https://safeutils.com/base-64-encoder https://safeutils.com/binary-to-ascii https://safeutils.com/case-converter https://safeutils.com/csv-to-json https://safeutils.com/decimal-to-ascii https://safeutils.com/html-formatter https://safeutils.com/html-preview https://safeutils.com/html-to-markdown https://safeutils.com/id-generator https://safeutils.com/json-to-csv https://safeutils.com/json-to-xml -
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SampleSpecificDBGenerator
Generates custom UniProt-XML databases from RNA-Seq data
SampleSpecificDBGenerator is a program that takes RNA sequencing data analysis results and translates them into protein database entries that are appended to a UniProt-XML file. This XML is condensed, meaning that much of the extraneous author information in UniProt-XMLs is removed for faster search times in Morpheus. Please cite http://pubs.acs.org/doi/abs/10.1021/acs.jproteome.5b00817. -
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SandDance
Visually explore, understand, and present your data
By using easy-to-understand views, SandDance helps you find insights about your data, which in turn help you tell stories supported by data, build cases based on evidence, test hypotheses, dig deeper into surface explanations, support decisions for purchases, or relate data into a wider, real world context. SandDance uses unit visualizations, which apply a one-to-one mapping between rows in your database and marks on the screen. Smooth animated transitions between views help you to maintain context as you interact with your data. This new version of SandDance has been rebuilt from scratch with the goal of being modular, extensible, and embeddable into your custom applications. We are open and driven by the community through contributions, feature requests, and discussion. SandDance was created by the Microsoft Research VIDA Group which explores novel technologies for visualization and immersive data analytics. -
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Savuka-VirtualBox
Virtual Box VDI of SliTaz Linux with Savuka installed and configured
Savuka global analysis software (www.osmanbilsel.net) is installed and configured in a light version of SliTaz linux (www.SliTaz.org). root name: root root password: root username: tux password: root Instructions: -Download and install 7zip (www.7-zip.org) -Extract files to HDD -Install included VirtualBox (not tested on other versions, but shouldn't matter) -Within VirtualBox make a new machine ----Machine/New --------Name: Savuka / Type: Linux / Version: Other Linux (32-bit) --------1024MB RAM -------- Use Existing virtual drive (point to extracted Savuka.vdi) ---- Machine/Settigns/Display: set video memory to 50 MB, enable 2D and 3D acceleration ---- Machine/Settings/Shared Folders: Create new machine folder. Point to any data directory, folder name: DATA, select Auto-mount. Note: "Folder name" must be 'DATA' in all caps to link on boot Thats it! More Info: www.osmanbilsel.net www.paulnobrega.net -
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SODA is short for School Online Data Analysis. The project's aim is to simplify the process of undertaking meaningful data analysis at both the departmental and whole school curriculum levels.
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Seer
Seer is a multipurpose data analysis package for Monte Carlo data.
Seer is a multipurpose data analysis package for Monte Carlo simulation data, particularly for collider physics processes. Seer reads LHCO files and performs a variety of cuts and analyses on the data for either exploratory data analysis or reproduction of experimental studies. -
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Ship Lock Scheduling
Scheduling lockages at ship locks with several parallel lock chambers
This Java software includes algorithms of combinatorical optimization for the NP-hard offline ship lock scheduling problem. Solutions and performed computations can be displayed graphically. Besides, there is a framework for generating test instances and running these in parallel, as well as R/JGR code for statistical evaluation. Some tools for estimating the quality of calculated solutions will be further improved. Initially the software was developed within a project of TU Berlin regarding the Kiel Canal. See project wiki for conditions that should be met by applications. -
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Short-3DXRD
Data analysis package for 3D-XRD
Please contact the authors by sending a message (via https://sourceforge.net/users/rmhuizenga). We will be glad to send you the programs. -
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Students project for finding stock market trading system based on a simulation of market and historical data analysis.
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This project aims to develop open source psychometric data analysis software, including estimation software for Rasch and Item Response Theory (IRT) models for both dichotomous and polytomous test items.
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Sorting Algorithms
Searching and Sorting algorithms
Selection Sort, Quick Sort, Merge Sort, etc Data analysis and efficiency. -
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Command line encryption tool for one time, daemon, or stream data processing. Data stats, check sums, conversion to/from text. Data/keys from files, pipes, standard input. In-place/diverted processing or data-analysis-only. Random, file, password keys.
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The application helps you with your statistics assignment help. Our Stata assignment help is popular among students following course economics and political science. We offer R assignment help for data analysis as well as graphical user interface although SPSS looks a lot like excel but mostly students avail our excel assignment help for small datasets and SPSS assignment help for larger datasets. For assistance you can email us at info@statisticshomeworkhelper.com .
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Status Board is a web based (Apache, mod_perl, HTML::Mason, MySQL) system to store answers to questions and produce reports. It will support data export, compartmentialization of user access and constraints to user input for better data analysis.
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StockNovice
Program for Stock Exchange operations modeling and data analysis
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StreamAlert
StreamAlert is a serverless, realtime data analysis framework
StreamAlert is a serverless, real-time data analysis framework that empowers you to ingest, analyze, and alert on data from any environment, using data sources and alerting logic you define. Computer security teams use StreamAlert to scan terabytes of log data every day for incident detection and response. Incoming log data will be classified and processed by the rules engine. Alerts are then sent to one or more outputs. Rules are written in Python; they can utilize any Python libraries or functions. Merge similar alerts and automatically promote new rules if they are not too noisy. Ingested logs and generated alerts can be retroactively searched for compliance and research. Serverless design is cheaper, easier to maintain, and scales to terabytes per day. Deployment is automated, simple, safe and repeatable for any AWS account. Secure by design, least-privilege execution, containerized analysis, and encrypted data storage. -
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Swift is an open source package for primary data analysis on next-gen sequence data "from images to basecalls". Currently Swift is targeted toward Solexa/Illumina sequencing, but is designed to be platform agnostic.
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Symfony PropertyInfo
Extracts information about PHP class' properties using metadata
Symfony PropertyInfo is a component that extracts information about the properties of PHP classes, such as their names, types, visibility, and documentation. It is particularly useful in scenarios like serialization, form generation, and validation, where understanding the structure of an object is essential. PropertyInfo can fetch data from PHPDoc annotations, reflection, and type hints, offering flexible integration with Symfony and other systems. -
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TABSAT
Analysis Tool for Targeted Amplicon Bisulfite Sequencing
TABSAT - Targeted Amplicon Bisulfite Sequencing Analysis Tool A tool for analyzing targeted bisulfite sequencing data generated on an Ion Torrent PGM / Illumina MiSeq. The workflow starts with raw sequencing data, performs quality assessment, and uses a tailored version of Bismark to map the reads to a reference genome. Results are aggregated across all samples, presented in table format, and visualized as lollipop plots. In addition, due to the long read length of Ion Torrent reads, the pipeline is able to deduce specific methylation-patterns present in a sample. Please check out the Github page: https://github.com/tadkeys/tabsat -
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TONIC
Analysis of neural spiking data generated by multi-electrode arrays
A neuroscience data analysis package for handling extracellular potentials recorded by multi-electrode arrays, including signal processing, event detection, feature extraction, and spike sorting. -
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TOPS_CeMM
User Friendly Data Analysis Tool for Interaction Data
TOPS provides the benchtop scientist with a free toolset to analyze, filter and visualize data from functional genomic gene-gene and gene-drug interaction screens with a flexible interface to accommodate various different technologies and analysis algorithms in addition to those already provided here. -
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TSDF
Time-Series Degradation Data Format for Semiconductor Reliability Data
TSDF is data format for reliability degradation data, specifically degradation data from semiconductor devices. It aims to take a potentially large amount of reliability data and put it into a small number of files that are human readable. TSDF does this by separating metadata from raw data. With this separation, it is easy for a user to view or search through a set of TSDF files to get information needed to put the data in context (process, lot and wafer info, device types, failure mechanism, etc.) Based on this data format, software tools such as conversion programs, database management tools, and data analysis tools will be developed and distributed to the user community. Extensions to handle detailed device parameter information, detailed stress waveforms, and semiconductor package information are being planned. -
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TaBS-Pipe
Targeted Bisulfite Sequencing Data Analysis Pipeline v1.0.2
A pipeline to analyze the data obtained from targeted bisulfite sequencing through the ion-torrent platform. TaBSAP is a pipeline to map bisulfite treated sequencing reads to a genome of interest and perform methylation calls in a single step and enables a researcher to analyze the methylation levels of their samples straight away. It's main features are: -Bisulfite mapping and methylation calling in one single step -Supports single-end read alignments -Alignment seed length, number of mismatches etc. are adjustable -The output gives heatmap with categories.
