Open Source Data Analytics Tools - Page 15
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VISPA is a novel development environment for high energy physics analyses, based on a combination of graphical and textual steering. The main goal of VISPA is to support users in prototyping, performing, and verifying a data analysis of any complexity.
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PROJECT MOVED: see http://www.vmtk.org for up-to-date information. Libraries and tools for 3D reconstruction, geometric analysis, mesh generation and surface data analysis in image-based blood vessel modeling.
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ViStream (http://davis.wpi.edu/xmdv/downloads/) is a tool for the visual analysis of multivariate streaming data. It supports a number of computational data analysis methods and provides numerous visualizations and interactions for exploring dynamic data.
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WebGR
Web services for support of Growth and Reproduction Studies
The objective of this project is to develop a set of web services to support the organization and data analysis of calibration workshops, both for age and maturity. The software is licensed with a Creative Commons Attribution-Share Alike 3.0 license to promote transparency, technology transfer and peer review. -
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Web services to support the organization and data analysis of Age Calibration Workshops and Maturity Staging Workshops.
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Wooey
A Django app that creates automatic web UIs for Python scripts
Wooey is a simple web interface to run command line Python scripts. Think of it as an easy way to get your scripts up on the web for routine data analysis, file processing, or anything else. The project was inspired by how simply and powerfully sandman could expose users to a database and by how Gooey turns ArgumentParser-based command-line scripts into WxWidgets GUIs. Originally two separate projects (Django-based djangui by Chris Mitchell and Flask-based Wooey by Martin Fitzpatrick) it has been merged to combine our efforts. Enable the easy wrapping of any program in simple python instead of having to use language specific to existing tools such as Galaxy. Enable fellow lab members with no command line experience to utilize python scripts. Autodocument workflows for data analysis (simple model saving). -
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X-SOCS
X-ray Strain Orientation Calculation Software
The X-ray Strain Orientation Calculation Software (X-SOCS) is a user-friendly software, developed for automatic analysisof 5D sets of data recorded during continuous mapping measurements. X-SOCS aims at retrieving strain and tilt maps of nanostructures, films, surfaces or even embedded structures. For more information: http://scripts.iucr.org/cgi-bin/paper?S1600576714004506 To download the latest version of XSOCS (D. Naudet, T. Vincent, M.I. Richard, G. Chahine), follow the instruction in the following link: https://gitlab.esrf.fr/kmap/xsocs You can find on youtube video tutorials explaining the main steps to follow for a standard KMAP data analysis. In the folder XSOCS_tutorials_data of the Files tab, you can download the dataset used in the tutorials. Make sure to read the readme file. -
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XMLTV 1.4.0
Utilities to obtain, generate, and post-process TV listings data
XMLTV is a suite of utilities to obtain, generate, and post-process TV listings data in XMLTV format. It provides tools to gather television listings, process listings data, and help organize TV viewing. -
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XParallax viu
Software for automated astrometry
XParallax viu is a free software tool for automated astrometric data reduction of astronomic CCD images. It helps astronomers to perform an accurate astrometric reduction of dozens ore even hundreds of images which can be used in subsequent data analysis process. Fit headers generated by this software are fully compatible with other commonly used image utilities like SAO DS9 or Aladin Sky Atlas. -
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Zherlock has now changed name to SciCraft and no longer hosted on sourceforge. Visit our new site at http://www.scicraft.org
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Zika-RNAseq-Pipeline
An open RNA-Seq data analysis pipeline tutorial
RNA-seq analysis is becoming a standard method for global gene expression profiling. However, open and standard pipelines to perform RNA-seq analysis by non-experts remain challenging due to the large size of the raw data files and the hardware requirements for running the alignment step. Here we introduce a reproducible open source RNA-seq pipeline delivered as an IPython notebook and a Docker image. The pipeline uses state-of-the-art tools and can run on various platforms with minimal configuration overhead. The pipeline enables the extraction of knowledge from typical RNA-seq studies by generating interactive principal component analysis (PCA) and hierarchical clustering (HC) plots, performing enrichment analyses against over 90 gene set libraries, and obtaining lists of small molecules that are predicted to either mimic or reverse the observed changes in mRNA expression. -
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allink
Software for data analysis, image processing, simulations, solver.
Collection of utilities based on two basics classes: Matematica and VarData. Matematica) performs math operations on vectors and matrices for smoothing, interpolation, convolution, image processing... VarData) manipulate a structure of points connected by links. Addraw) openGL engine. ElPoly) analyze mechanical properties of polymer and membrane like structures. Addyn) perform molecular dynamics and Monte Carlo simulations and has a solver for 4th oder PDE. Avvis) perform all the operation of Matematica on different sets of data visualized on a Qt graphical interface. DrImage) image manipulation on the Matematica filters. The program is intended to use as less as possible external libs (optional: openGL, gsl, fftw, cgal, png, tiff, boost, MPI, Qt...). -
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bitlog is a cookie-based web stats framework written in PHP. Visits, Pageviews, Unique Visitors etc. are loged in a MySQL db. Administrators can perform complex data analysis regarding a website traffic -a basic set of detailed reports is included.
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bnmroffice
Beta version of bnmroffice v2
The program is used for bNMR data analysis. To download the latest version, please follow the link https://github.com/hsaadaoui -
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catcher(keylogger)
Catcher is a keylogger tool
Catcher is free tool for everyone that needs a keylogger to their project. * A new catcher will not be released this year(2013). But scheduled early next year. *manny016 is busy at the moment. *Some issues are being fixed and testing for issues. *The new software's finished last march 2013 but it's being hold because of some personal issues. Thank You For Your Support Please Never Stop Waiting!!! So what's to wait in the new catcher? Data storage is in xml. VB language. Data is fixed for data analysis. Not detected as a maleware any more. Easy to use, open and terminate. -manny016 -
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ckon
automatic build tool for ROOT data analysis software
ckon is a C++ program/tool which automatically takes care of compilation, dictionary generation and linking of programs and libraries developed for data analyses within the CERN ROOT analysis framework. This includes parsing include headers to figure out which libraries the main programs need to be linked to. It uses automake/autoconf to be platform independent and GNU install compliant. In addition, m4 macros are automatically downloaded and the according compiler flags included based on a list of boost libraries provided in the config file. -
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clusterProfiler
A universal enrichment tool for interpreting omics data
clusterProfiler is an R/Bioconductor package that provides a unified workflow for functional enrichment analysis to interpret high-throughput omics results. It supports both over-representation analysis and gene set enrichment analysis, letting you work with unranked gene lists or ranked statistics from differential pipelines. The package connects to multiple knowledge bases—such as Gene Ontology, KEGG, Reactome, Disease Ontology, MeSH and others—through a consistent interface so you can query different biological lenses without rewriting code. It is designed for breadth, covering coding and non-coding features and thousands of organisms by leveraging continuously updated annotations. Results are returned in tidy, manipulation-friendly structures and pair naturally with rich visualization functions (via companion tooling) to summarize pathways, terms, and gene–set relationships. -
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decida is [de]vice & [ci]rcuit [d]ata [a]nalysis. It is used for electron device characterization, procedural simulation/analysis of electronic circuits, or more general data analysis tasks.
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dnaasm
set of tools for NGS data analysis
genome de novo assembler for next generation sequencing data, tool to link contigs by long DNA reads -
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e-Science Central
Cloud based scientific data analysis
e-Science Central has moved to BitBucket, please visit: https://bitbucket.org/digitalinstitute/esciencecentral/ -
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eRNA
A RNA data analysis tool
eRNA: A RNA data analysis tool for high-throughput RNA sequencing experiments -
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elder-pt
data flow framework for data analysis applications
Data analysis in nuclear/particle physics experiments is based on data processing of event-by-event data. Each event contains information measured by arrays of detectors. This data has to be combined, processed, interpreted and reduced in size until the physics information of interest is revealed. Eventually, parts of the data is visualized by sorting it into histograms. Elder-Pt is the prototype of a framework, that facilitates the task of event-by-event data analysis. It provides: 1) a parser for textual graph description 2) an API to write processing nodes that will be used in the graph description for the graph 3) a set of frequently used processing nodes -
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etcore
etcore data analysis
etcore data analysis
