Search Results for "taxonomy"
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Showing 79 open source projects for "taxonomy"
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Image Fusion
Deep Learning-based Image Fusion: A Survey
...It is not a single monolithic tool, but rather a curated reference and aggregation of methods, code and performance comparisons in the domain of image fusion. Survey style description of method taxonomy, architectures, loss types. Compilation of many state-of-the-art image fusion methods (infrared + visible, multi-focus, multi-exposure). Survey style description of method taxonomy, architectures, loss types. -
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RAG-Survey
Collecting awesome papers of RAG for AIGC
...Retrieval-augmented generation combines large language models with external knowledge retrieval systems to improve factual accuracy and contextual understanding. The repository functions as a curated catalog of research papers categorized according to a taxonomy proposed in a related survey paper on RAG methods. It organizes literature into multiple areas including foundational RAG models, architectural improvements, and application-specific implementations. Because the field is evolving rapidly, the repository is continuously updated with newly published research and emerging techniques. ... -
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Transformers in Time Series
A professionally curated list of awesome resources
...It compiles literature from major conferences and journals and categorizes them by application domains such as forecasting, anomaly detection, and classification. The repository also provides a taxonomy that helps researchers understand different architectural variations of transformers designed for time series data. These models are particularly important because transformers can capture long-range dependencies in sequential data, which makes them well suited for complex temporal patterns in real-world datasets. -
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Java Design Patterns
Design patterns implemented in Java
A comprehensive, community-maintained collection of design pattern implementations in Java, offering well-documented, educational examples to help developers understand and apply common architectural solutions. All designs should be as simple as possible. You should start with KISS, YAGNI, and Do The Simplest Thing That Could Possibly Work principles. Complexity and patterns should only be introduced when they are needed for practical extensibility. The design patterns are now available as... -
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Hugo Book Theme
Hugo documentation theme as simple as plain book
Hugo documentation theme as simple as a plain book. By default, the theme will render pages from the content/docs section as a menu in a tree structure. You can set title and weight in the front matter of pages to adjust the order and titles in the menu. There are a few configuration options that you can add to your config.toml file. A simple blog is supported in the section posts. A blog is not the primary use case of this theme, so it has only minimal features. The theme supports Hugo's... -
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CSS Inspiration
Curated collection of interesting, creative, or inspiring CSS effects
CSS-Inspiration is a living gallery of modern CSS effects and components that highlights what’s possible with pure CSS and minimal markup. The collection ranges from micro-interactions and loaders to 3D transforms, complex backgrounds, hover states, and text effects, each presented as a small, self-contained demo. Source code is front and center, encouraging developers to study, copy, and tweak snippets for their own projects. Many examples lean on contemporary features—custom properties,... -
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UCO3D
Uncommon Objects in 3D dataset
uCO3D is a large-scale 3D vision dataset and toolkit centered on turn-table videos of everyday objects drawn from the LVIS taxonomy. It provides about 170,000 full videos per object instance rather than still frames, along with per-video annotations including object masks, calibrated camera poses, and multiple flavors of point clouds. Each sequence also ships with a precomputed 3D Gaussian Splat reconstruction, enabling fast, differentiable rendering workflows and modern implicit/point-based modeling experiments. ... -
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Hugo PaperMod
A fast, clean, responsive Hugo theme
...It focuses on clean typography, responsive layouts, and sensible defaults, while exposing a large set of front-matter and config options. Built-in features include dark/light modes, archive and taxonomy views, reading-time indicators, breadcrumbs, and an optional profile/landing layout. Client-side search, code highlighting, social links, and comment integrations can be enabled with simple configuration, avoiding custom JavaScript for most needs. The theme ships with SEO-friendly meta tags, Open Graph/Twitter cards, and RSS feeds to improve discoverability. ... -
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Taxallnomy is a taxonomic database that provides taxonomic lineages according to the ranks used on Linnean classification system (e.g. Kingdom, Phylum, Class etc.). Taxallnomy is based on the NCBI Taxonomy, thus you will find along the taxonomic lineage either taxa originally ranked in NCBI Taxonomy or some unique nodes created by the Taxallnomy algorithm, since some taxonomic ranks are missing in the original taxonomic lineage (for example, the Superclass rank is missing on the Homo sapiens lineage).
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Free DELTA
Software tools for processing taxonomic descriptions in DELTA format
The Free DELTA Project is a free, open-source, software alternative for a generic system to the processing of taxonomic descriptions based on the DELTA (DEscription Language for TAxonomy) format. -
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com-hfg
java library for XML, HTML, or SVG generation + bioinformatics classes
The com.hfg (hairyfatguy.com) library is a collection of utility classes that make it easy to construct XML, HTML, XHTML, or SVG in an object-oriented way from within your Java application or webapp. It also contains other IO utilities and bioinformatics classes for phylogenetic trees, taxonomy, and multi-chain proteins. Requires JDK1.8. -
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Quiz/Survey/Test - QST
A Free, complete, open source universal assessment/exam platform
QST, the worlds unparalleled open source online/lan assessment software. From a quick quiz on your phone to very large scale, high stakes, proctored desktop testing, we make it easy/secure/economical. Our intuitive design contains features (Immediate detailed results, Create/Export/Import/Convert Questions, WYSIWYG/Math-Chemistry/Basic Editors, Question/Item Bank, Multiple Question Types, Multiple Delivery Styles, Multiple Delivery/Results Options, Adaptive/Branching Questions, Randomly... -
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shadcn Taxonomy
An open source application built using the new router
Taxonomy is an open-source web application project built with modern JavaScript frameworks to demonstrate how a fully featured application can be implemented using the newest capabilities of Next.js and React. The project was created by the shadcn-ui ecosystem as an experiment to explore modern architecture patterns such as server components, the Next.js app router, and modular UI component design. -
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...More information and tutorials on how to install, use and retrain RDP Clasifier can be found on at https://github.com/rdpstaff/classifier and John Quensen's blog (https://john-quensen.com/). Citation: 1. Wang Q, Garrity GM, Tiedje JM, Cole JR. Naive Bayesian classifier for rapid assignment of rRNA sequences into the new bacterial taxonomy. Appl Environ Microbiol. 2007 Aug;73(16):5261-7. 2. Wang Q, Cole JR. Updated RDP taxonomy and RDP Classifier for more accurate taxonomic classification. Microbiol Resour Announc. 2024 Apr 11;13(4):e0106323.
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Woocommerce Product List Widget
Enhance Your WooCommerce Store with the Woo Product List Widget Plugin
Running a successful online store with WooCommerce requires careful attention to product presentation and user experience. One of the key elements in achieving this is displaying your products in an organized and visually appealing manner. This is where the GM Woo Product List Widget plugin comes into play. In this blog post, we'll explore the features and benefits of this powerful plugin that can help you take your WooCommerce store to the next... -
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TaxOnTree
A program for associating taxonomic information in a phylogenetic tree
...Also, a newick file produced with user software and specific settings can be used to proceed with the taxonomic labeling. TaxOnTree turns its user into an expert on taxonomy. TaxOnTree also corrects for the absence of some taxa in NCBI taxonomy. Command line program is easy to set up and can be coupled to several bioinformatics tools, producing a colored tree in PDF format. TaxOnTree is available as a web tool in http://biodados.icb.ufmg.br/taxontree for low demanding jobs. -
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The GeneRFinder-Benchmark is a comprehensive benchmark data for gene prediction which is based on data of CAMI (Critical Assessment of Metagenome Interpretation) and contains labeled data from gene regions. The benchmark is made up of 9 datasets. For each one of them is provided: - List of names, taxonomy ID and taxonomic level of the genomes of the organisms that make up the dataset (genomes.csv) - Set of sequences extracted from the respective selected genomes (sequences.fasta) - Ground truth for each of the extracted ORFs (groundtruth.csv) For information about download, see the documentation.
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MaxBin2
An automatic tool for binning metagenomics sequences
...For users' convenience MaxBin will report genome-related statistics, including estimated completeness, GC content and genome size in the binning summary page. Users could use MEGAN or similar software on MaxBin bins to find out the taxonomy of each bin after the binning process is finished. -
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MaxBin
An automatic tool for binning metagenomics sequences
...For users' convenience MaxBin will report genome-related statistics, including estimated completeness, GC content and genome size in the binning summary page. Users could use MEGAN or similar software on MaxBin bins to find out the taxonomy of each bin after the binning process is finished. The most current version is 2.2.7. MaxBin was published on Microbiome journal (2:26)! Please cite the Microbiome paper if you use MaxBin in your work. -
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An alignment-free standalone tool with interactive graphical user interface for DNA sequence comparison and analysis
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MetaAnnotator
Fast and Accurate Taxonomic Annotation for Metagenomic reads
Hi everyone. NCBI has adopted a new format for its ref sequences. MetaAnnotator currently can not work on latest version of NCBI ref seq. I will update the program soon. You can use the archive version ftp://ftp.ncbi.nlm.nih.gov/genomes/archive/old_refseq/Bacteria/all.fna.tar.gz before that. Taxonomic annotation is a critical first step for analysis of metagenomic data. Despite a lot of tools being developed, the performance (both running time and accuracy) is still not satisfactory, in... -
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OLiA
OWL/DL ontologies for linguistic annotations
MOVED TO https://github.com/acoli-repo/olia. The Ontologies of Linguistic Annotations (OLiA) provide an OWL/DL taxonomy of data categories as a reference for linguistic annotation (OLiA Reference Model), plus OWL/DL models for a large number of annotation schemes (OLiA Annotation Models) and their relationship to reference data categories (OLiA Linking Models). The OLiA Reference Model itself is linked to community-maintained repositories such as GOLD (http://linguistics-ontology.org/) and ISOcat (http://www.isocat.org) The OLiA ontologies were originally developed as part of an infrastructure for the sustainable maintenance of linguistic resources (http://www.sfb441.uni-tuebingen.de/c2/index-engl.html), their fields of application include the formalization of annotation schemes, concept-based querying over heterogeneously annotated corpora, and the development of interoperable NLP pipelines. -
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...XBRL Formula Webservices is a framework for flexible processing of business rules defined with XBRL Formula from the use of services (...) 5. XBRL Similarity Tool implements a process to evaluate similarity between concepts of XBRL (...) 6. XBRL SPED Taxonomy is a data model, in order to create a standard, organized to support to Brazilian Public Digital Bookkeeping System (SPED)(...) 7. easyXBRL is a Python-based XBRL library (...) 8. J-easyXBRL is a Java-based XBRL library (...) 9. Xbrl Parser converts XBRL file from XML to JSON format; https://sourceforge.net/p/xbrlframework/wiki/Home
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Go Patterns
Curated list of Go design patterns, recipes and idioms
...Creational, structural, behavioral pattern examples in Go. Explanatory commentary and sample code snippets. Concurrency idioms (e.g. bounded parallelism, fan-in/fan-out). Organized taxonomy for Go idioms. -
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HitKeeper is a database application for use in BioInformatics. It deals with "hits" (predicted features) on biological sequences (protein, DNA), handles incremental updates effectively, supports taxonomy, and provides original query tools.
