Search Results for "taxonomy"
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Showing 71 open source projects for "taxonomy"
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From improving customer experience through seamless sign-on to making MFA as easy as a click of a button – your login box must find the right balance between user convenience, privacy and security.
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Hugo Book Theme
Hugo documentation theme as simple as plain book
Hugo documentation theme as simple as a plain book. By default, the theme will render pages from the content/docs section as a menu in a tree structure. You can set title and weight in the front matter of pages to adjust the order and titles in the menu. There are a few configuration options that you can add to your config.toml file. A simple blog is supported in the section posts. A blog is not the primary use case of this theme, so it has only minimal features. The theme supports Hugo's... -
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... Bayesian classifier for rapid assignment of rRNA sequences into the new bacterial taxonomy. Appl Environ Microbiol. 2007 Aug;73(16):5261-7. 2. Wang Q, Cole JR. Updated RDP taxonomy and RDP Classifier for more accurate taxonomic classification. Microbiol Resour Announc. 2024 Apr 11;13(4):e0106323.
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Quiz/Survey/Test - QST
A Free, complete, enterprise grade, open source exam management system
QST, the worlds unparalleled open source online assessment software. From a quick quiz on your phone to very large scale, high stakes, proctored desktop testing, we make it easy, secure and cheap. Our intuitive design contains features (Immediate detailed results, Create/Export/Import/Convert Questions, WYSIWYG/Math-Chemistry/Basic Editors, Question/Item Bank, Multiple Question Types, Multiple Delivery Styles, Multiple Delivery/Results Options, Adaptive/Branching Questions, Randomly Chosen... -
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Taxallnomy is a taxonomic database that provides taxonomic lineages according to the ranks used on Linnean classification system (e.g. Kingdom, Phylum, Class etc.). Taxallnomy is based on the NCBI Taxonomy, thus you will find along the taxonomic lineage either taxa originally ranked in NCBI Taxonomy or some unique nodes created by the Taxallnomy algorithm, since some taxonomic ranks are missing in the original taxonomic lineage (for example, the Superclass rank is missing on the Homo sapiens...
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HubSpot is an AI-powered customer platform with all the software, integrations, and resources you need to connect your marketing, sales, and customer service. HubSpot's connected platform enables you to grow your business faster by focusing on what matters most: your customers.
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Free DELTA
Software tools for processing taxonomic descriptions in DELTA format
The Free DELTA Project is a free, open-source, software alternative for a generic system to the processing of taxonomic descriptions based on the DELTA (DEscription Language for TAxonomy) format. -
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Default Featured Image Wordpress
Add a default featured image to the media settings page.
Are you tired of manually setting feature images for your WordPress posts? Do you find yourself spending too much time trying to find the right image every time you create a new post? We have the perfect solution for you! Introducing the "Setup Default Feature Image" plugin, a handy tool that streamlines your workflow and saves you valuable time. https://wordpress.org/plugins/setup-default-feature-image/ Don't let the hassle of setting feature images slow down your content creation... -
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com-hfg
java library for XML, HTML, or SVG generation + bioinformatics classes
The com.hfg (hairyfatguy.com) library is a collection of utility classes that make it easy to construct XML, HTML, XHTML, or SVG in an object-oriented way from within your Java application or webapp. It also contains other IO utilities and bioinformatics classes for phylogenetic trees, taxonomy, and multi-chain proteins. Requires JDK1.8. -
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Woocommerce Product List Widget
Enhance Your WooCommerce Store with the Woo Product List Widget Plugin
Running a successful online store with WooCommerce requires careful attention to product presentation and user experience. One of the key elements in achieving this is displaying your products in an organized and visually appealing manner. This is where the GM Woo Product List Widget plugin comes into play. In this blog post, we'll explore the features and benefits of this powerful plugin that can help you take your WooCommerce store to the next... -
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TaxOnTree
A program for associating taxonomic information in a phylogenetic tree
... and specific settings can be used to proceed with the taxonomic labeling. TaxOnTree turns its user into an expert on taxonomy. TaxOnTree also corrects for the absence of some taxa in NCBI taxonomy. Command line program is easy to set up and can be coupled to several bioinformatics tools, producing a colored tree in PDF format. TaxOnTree is available as a web tool in http://biodados.icb.ufmg.br/taxontree for low demanding jobs. -
FortiGate-VM delivers comprehensive security and scalable VPN connectivity for your AWS workloads, while native AWS integrations unlock broad coverage for your environment. Now with support for AWS Graviton2 instances, FortiGate lets you optimize price performance and reduce your Amazon EC2 costs by up to 20 percent. Deploy today in AWS Marketplace.
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The GeneRFinder-Benchmark is a comprehensive benchmark data for gene prediction which is based on data of CAMI (Critical Assessment of Metagenome Interpretation) and contains labeled data from gene regions. The benchmark is made up of 9 datasets. For each one of them is provided: - List of names, taxonomy ID and taxonomic level of the genomes of the organisms that make up the dataset (genomes.csv) - Set of sequences extracted from the respective selected genomes (sequences.fasta) - Ground...
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MaxBin2
An automatic tool for binning metagenomics sequences
...-related statistics, including estimated completeness, GC content and genome size in the binning summary page. Users could use MEGAN or similar software on MaxBin bins to find out the taxonomy of each bin after the binning process is finished. -
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MaxBin
An automatic tool for binning metagenomics sequences
... or similar software on MaxBin bins to find out the taxonomy of each bin after the binning process is finished. The most current version is 2.2.7. MaxBin was published on Microbiome journal (2:26)! Please cite the Microbiome paper if you use MaxBin in your work. -
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An alignment-free standalone tool with interactive graphical user interface for DNA sequence comparison and analysis
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MetaAnnotator
Fast and Accurate Taxonomic Annotation for Metagenomic reads
Hi everyone. NCBI has adopted a new format for its ref sequences. MetaAnnotator currently can not work on latest version of NCBI ref seq. I will update the program soon. You can use the archive version ftp://ftp.ncbi.nlm.nih.gov/genomes/archive/old_refseq/Bacteria/all.fna.tar.gz before that. Taxonomic annotation is a critical first step for analysis of metagenomic data. Despite a lot of tools being developed, the performance (both running time and accuracy) is still not satisfactory, in... -
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OLiA
OWL/DL ontologies for linguistic annotations
MOVED TO https://github.com/acoli-repo/olia. The Ontologies of Linguistic Annotations (OLiA) provide an OWL/DL taxonomy of data categories as a reference for linguistic annotation (OLiA Reference Model), plus OWL/DL models for a large number of annotation schemes (OLiA Annotation Models) and their relationship to reference data categories (OLiA Linking Models). The OLiA Reference Model itself is linked to community-maintained repositories such as GOLD (http://linguistics-ontology.org... -
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... of services (...) 5. XBRL Similarity Tool implements a process to evaluate similarity between concepts of XBRL (...) 6. XBRL SPED Taxonomy is a data model, in order to create a standard, organized to support to Brazilian Public Digital Bookkeeping System (SPED)(...) 7. easyXBRL is a Python-based XBRL library (...) 8. J-easyXBRL is a Java-based XBRL library (...) 9. Xbrl Parser converts XBRL file from XML to JSON format; https://sourceforge.net/p/xbrlframework/wiki/Home
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HitKeeper is a database application for use in BioInformatics. It deals with "hits" (predicted features) on biological sequences (protein, DNA), handles incremental updates effectively, supports taxonomy, and provides original query tools.
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MT-MT-Toolbox
Metagenomics version of MTToolbox
MT-Toolbox is a pipeline of tools used for analyzing molecule tagged MiSeq reads. The metagenomics version of MT-Toolbox is a plugin that includes operations for OTU building, OTU taxonomy assignments, and OTU contaminant filtering. These features are not included in the basic version because they only apply to microbial 16S profiling experiments. The standard version of MT-Toolbox can be applied to any amplicon sequencing project where molecule tags are incorporated. For more information... -
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Taxy is a tool for browsing and quering data organized as a taxonomy. Through the use of plugins it allows to connect to different data sources, such as the NCBI species taxonomy or the catalogue of biomedical services of the EU project ACGT.
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Gleez CMS
A Light, Simple, Flexible Content Management System
... suitable for any business or organization. Built on the PHP programming language and the MySQL database, Gleez delivers superb performance on any size application. Gleez uses the MPTT system for classifying content, which is known as taxonomy and is implemented in the core. You can define your own vocabularies (groups of taxonomy terms), and add terms to each vocabulary. Users, Roles, and Permissions. Users on your site can be assigned permissions via roles. -
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IM-TORNADO
Illinois Mayo Taxonomy Operations for RNA Database Operations
IM-TORNADO HAS MOVED TO GITHUB: https://github.com/pjeraldo/imtornado2 Pipeline for analysis of paired-end 16S rDNA amplicon data. -
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Crosscut is a set of high-quality and efficient modules handling NGS datasets in a population. Chronos is a highly sensitive and efficient multiple whole genome aligner in a population. Apollo is a structural variant caller in a population. Poseidon is a highly sensitive and efficient taxonomy classifier. All algorithms are developed since Feb. 6. 2015 by Euncheon Lim in Prof. Weigel's Lab in Max-Planck Institute for Developmental Biology.
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QuickApps CMS
The open source CMS powered by CakePHP v2 Framework
QuickApps CMS is a free open source CMS released under GPL license and inspired by most of the popular cms. Powered by CakePHP v2 MVC framework makes this CMS the perfect development platform. A robust application fully expandable and capable of manage virtually any website, from very simplistic websites, as well as very complex web sites. Easy for both developers and users to work with. -
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mirUtils
miRNA alignment quantitation based on miRBase annotations
mirUtils provides quantitation of aligned microRNA sequences based on miRBase annotations. Starting from a miRBase-aligned BAM/SAM file, mirUtils reports counts and quality metrics for several taxonomy levels, including miRNA precursor hairpins, hairpin groups and families, mature miRNA loci, mature sequences, and genomic clusters, as well as per-hairpin-position alignment start and base coverage details. -
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“Arabic Wikipedia into Named Entity Taxonomy” is a dataset consists of 4000 of Arabic Wikipedia articles that classified into coarse-grained NE taxonomy. This dataset can be used in document classification tasks in relation to NER. To use this corpus, please cite the following publication: F. Alotaibi and M. Lee, "Mapping Arabic Wikipedia into the Named Entities Taxonomy", In Proceedings of COLING 2012: Posters, p43-52, IIT, Mumbai, India, December 8-15. 2012. Author URL: http...