Search Results for "taxonomy"

A comprehensive, community-maintained collection of design pattern implementations in Java, offering well-documented, educational examples to help developers understand and apply common architectural solutions. All designs should be as simple as possible. You should start with KISS, YAGNI, and Do The Simplest Thing That Could Possibly Work principles. Complexity and patterns should only be introduced when they are needed for practical extensibility. The design patterns are now available as...

The com.hfg (hairyfatguy.com) library is a collection of utility classes that make it easy to construct XML, HTML, XHTML, or SVG in an object-oriented way from within your Java application or webapp. It also contains other IO utilities and bioinformatics classes for phylogenetic trees, taxonomy, and multi-chain proteins. Requires JDK1.8.

...More information and tutorials on how to install, use and retrain RDP Clasifier can be found on at https://github.com/rdpstaff/classifier and John Quensen's blog (https://john-quensen.com/). Citation: 1. Wang Q, Garrity GM, Tiedje JM, Cole JR. Naive Bayesian classifier for rapid assignment of rRNA sequences into the new bacterial taxonomy. Appl Environ Microbiol. 2007 Aug;73(16):5261-7. 2. Wang Q, Cole JR. Updated RDP taxonomy and RDP Classifier for more accurate taxonomic classification. Microbiol Resour Announc. 2024 Apr 11;13(4):e0106323.

Taxy is a tool for browsing and quering data organized as a taxonomy. Through the use of plugins it allows to connect to different data sources, such as the NCBI species taxonomy or the catalogue of biomedical services of the EU project ACGT.

For comparative plus/minus spreadsheet data, Coulson Plot Generator application creates a multiple pie diagram, for a rapid visual comparison of subunit occupancy across a range of entities. Numbers of pies, segments, labels and colours are customisable. Creates an editable PDF from a comma separated text file. Now with zoom capability and more memory, for larger datasets. Save images in several formats including SVG.

TopiaryExplorer has moved to GitHub. Find the new project info page here: https://github.com/qiime/Topiary-Explorer. If you need help or would like to add a bug/feature request, please do so there.

Constellio is an enterprise search engine that allows companies to search all their organization's information through a single interface (Web, CRM, ERP, ECM, Mail etc.). Constellio is Based on Apache Solr and Google Search Appliance's connector. Constellio has a powerful web crawler.

Dynamic multi-channel multi-taxonomy W3c standard compliant Content Management System with distributed editing and streaming support developed with XML/XSL and Java technologies (based upon HippoCMS).

Data mining tool for sequences (e.g. trajectories on a map, visited web pages, etc.) that creates a succinct description of the sequences, given a taxonomy (e.g. regions and sub-regions in the map, categories and sub-categories of pages, etc.).

The goal of this project is to build a very large ontology. What is intended is a multiple inheritence taxonomy with properties. Usual ontologies like OpenCyc or ThoughTreasure weights a few megabytes. The project will build a 100 megabyte ontology.

ITMM, developed by the IASC Foundation XBRL Team, is a GWT based web application, which allows to browse and combine XBRL Taxonomy modules. It therefore combines XML, XBRL and Java related technologies. Visit http://xbrl-ifrs.org/ITMM to see ITMM working

Online bibliography, based on BibTeX's capabilities. Supports searching, rating, taxonomy, user management and more.

OntoExtractor is a way of building ontologies that proceeds in a bottom-up fashion, defining concepts as clusters of concrete XML objects. From a set of XML documents the application generates a taxonomy. OntoExtractor has been developed so far by the Kn

PANDA (Protein And Nucleotide Data Archive) unifies the archival of the sequences from Taxonomy,GenBank,RefSeq,UniProt,PDB,and PRF on a regular interval to build and maintain a Protein and Nucleotide data archive. This project is part of BRC project fund

Analysis and visualization of the del.icio.us community. Supports different focuses on taxonomy and information distribution.

Qualiweb aims at providing semantic web metrics for modeling a website visitors needs according to a given taxonomy or document classification. Web metrics provided by Qualiweb give an indication of how successful each of the website topics have been.

Harmonise is a metadata, taxonomy and content management system written in Java and based upon the WebDAV standard. Unlike traditional CMSs it focuses on metadata management and integrates that with content management and publishing.

A set of tools allowing non-specialistic users to build taxonomies for XBRL 2.1 (Extended Business Reporting Language), starting from reports in electronic format. MS Access data entry tool, in italian language. Lbl, Ref, Pres, Calc linkbases. See Docs!

A Java implementation of an XBRL (Extensible Business Reporting Language) Discoverable Taxonomy Set Compilation. This project is now inactive. XBRL Java API work has migrated to http://xbrlapi.sourceforge.net/.

A tool to extract taxonomy from OWL ontology, translate it into Bayesian Nets and integrate uncertainty knowledge into result BNs.