The RDP Classifier is a naive Bayesian classifier that can rapidly and accurately provides taxonomic assignments from domain to genus, with confidence estimates for each assignment. More information can be found at http://rdp.cme.msu.edu/.

Features

  • Release 2.11 provides subcommand to display the pre-compiled taxonomy versions.
  • Release 2.10 provides gene copy number adjustment for 16S gene sequences.
  • Release 2.7 offers updated Fungal LSU training set No 11. The new Fungal LSU training set offers increased coverage of the Glomeromycota, Chytridiomycota and other basal lineages, with expanded non-fungal Eukarya phyla to better separate fungi from other eukaryotes.
  • The RDP Classifier now allows classification of both bacterial and archaeal 16S rRNA sequences, Fungal LSU and Fungal ITS sequences.
  • The RDP MultiClassifier has been merged with RDP Classifier as one single package. The new version of RDP Classifier now offers subcommands for classification, library comparing, retraining classifier, leave-one-out testing and cross validation. See instructions on https://github.com/rdpstaff/classifier. Many more RDP open source tools and usage examples on GitHub (https://github.com/rdpstaff).

Project Activity

See All Activity >

Categories

Bio-Informatics

Follow RDP Classifier

RDP Classifier Web Site

Other Useful Business Software

License This HTML5 Speed Test for Your ISP or Network License This HTML5 Speed Test for Your ISP or Network Icon
License This HTML5 Speed Test for Your ISP or Network Icon

Are you an ISP or network administrator looking for a reliable, accurate, & affordable HTML5 speed test that works on all devices?

The SourceForge Speed Test measures Latency/Ping, Jitter, Download Speed, Upload Speed, Buffer Bloat, and Packet Loss. Upon completion, you can view detailed reports about your connection. This HTML5 speed test does not require Flash or Java, and works on all devices including tablets and smartphones. Host on your own infrastructure or use ours. For licensing, inquire today.

Rate This Project

Login To Rate This Project

User Ratings

★★★★★
★★★★
★★★
★★
0
0
0
0
0
ease 1 of 5 2 of 5 3 of 5 4 of 5 5 of 5 0 / 5
features 1 of 5 2 of 5 3 of 5 4 of 5 5 of 5 0 / 5
design 1 of 5 2 of 5 3 of 5 4 of 5 5 of 5 0 / 5
support 1 of 5 2 of 5 3 of 5 4 of 5 5 of 5 0 / 5

User Reviews

Be the first to post a review of RDP Classifier!

Additional Project Details

Intended Audience

Science/Research

User Interface

Command-line

Programming Language

Java

Registered

2006-11-22