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Software tools for processing taxonomic descriptions in DELTA format
The Free DELTA Project is a free, open-source, software alternative for a generic system to the processing of taxonomic descriptions based on the DELTA (DEscription Language for TAxonomy) format.
HitKeeper is a database application for use in BioInformatics. It deals with "hits" (predicted features) on biological sequences (protein, DNA), handles incremental updates effectively, supports taxonomy, and provides original query tools.
Taxy is a tool for browsing and quering data organized as a taxonomy. Through the use of plugins it allows to connect to different data sources, such as the NCBI species taxonomy or the catalogue of biomedical services of the EU project ACGT.
Constellio is an enterprise search engine that allows companies to search all their organization's information through a single interface (Web, CRM, ERP, ECM, Mail etc.). Constellio is Based on Apache Solr and Google Search Appliance's connector. Constellio has a powerful web crawler.
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DeltaQt is part of the FreeDelta project and aims to implement a parser for DELTA (DEscription Language for TAxonomy) files using the Qt core framework.
DeltaQt is a library intended to be incorporated into other applications that require the ability to parse DELTA files.
Dynamic multi-channel multi-taxonomy W3c standard compliant Content Management System with distributed editing and streaming support developed with XML/XSL and Java technologies (based upon HippoCMS).
The goal of this project is to build a very large ontology.
What is intended is a multiple inheritence taxonomy with properties.
Usual ontologies like OpenCyc or ThoughTreasure weights a few megabytes.
The project will build a 100 megabyte ontology.
ITMM, developed by the IASC Foundation XBRL Team, is a GWT based web application, which allows to browse and combine XBRL Taxonomy modules. It therefore combines XML, XBRL and Java related technologies. Visit http://xbrl-ifrs.org/ITMM to see ITMM working
A PHP webapp to upload taxonomic checklists as Excel or CSV files to be served as TDWG TCS XML/RDF. It can handle multiple checklists, has a Tapir light webservice and a taxonomic tree of species names created from taxonomy in a checklist can be browsed.
OntoExtractor is a way of building ontologies that proceeds in a bottom-up fashion, defining concepts as clusters of concrete XML objects. From a set of XML documents the application generates a taxonomy. OntoExtractor has been developed so far by the Kn
A C++ database library stores a taxonomy that is represented with DAG(Directed Acyclic Graph). It structure like normal taxonomy, but each node can have more than one direct parent node.
Qualiweb aims at providing semantic web metrics for modeling a website visitors needs according to a given taxonomy or document classification. Web metrics provided by Qualiweb give an indication of how successful each of the website topics have been.
MyGCAT: My Genome Collection With Assigned Taxonomy provides for the management of extremely large sequence databases and allows for the creation of taxon specific BLAST databases. Primariliy a set of PERL scripts and a HTML interface to a MySQL database
DNAID software is a tool for assessing confidence in biological identifications made by comparing DNA sequences. It allows DNA sequences to be placed within a taxonomy and determines confidence in matches of a query sequence to each taxon.
A Java implementation of an XBRL (Extensible Business Reporting Language) Discoverable Taxonomy Set Compilation. This project is now inactive. XBRL Java API work has migrated to http://xbrlapi.sourceforge.net/.