Search Results for "strain analysis"
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Showing 28 open source projects for "strain analysis"
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1
Prokka
Rapid prokaryotic genome annotation
Prokka is a command-line software tool for rapid annotation of prokaryotic genomes (bacteria and archaea). Given a FASTA file of contigs, it predicts genes, rRNAs, tRNAs, and other functional elements, then assigns functions by comparing to reference protein databases and HMM profiles. It outputs GenBank, GFF, and other formats compatible with downstream tools and genome browsers. Prokka handles common complications—overlapping ORFs, frameshifts, alternate start codons—while providing... -
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Thick-Wall Composite PV
Stress-Strain analysis of thick-wall composite cylindrical PV
TWOPV.xlsm is a macro enabled Excel workbook for calculating stress and strain in a thick-wall cylindrical pressure vessel under external hydrostatic pressure. Vessel walls are a special case orthogonal composite laminate having a 2:1 ratio of circumferential to longitudinal oriented laminae. Inputs are: 1) unidirectional composite (UDC) properties, 2) cylinder radii and 3) pressure. Documentation and examples are included. -
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matgts
programs for geotechnical engineering and mathematics
Sour*eforge.net has become inaccesible to me because of Cl*udflare. The latest versions of the programs will be on my site: https://matei.one/. mtfem - finite element analysis, 2D, plane strain state (C, SDL), GNU/Linux and Wind0ws executables present; mtpile - analysis of a laterally loaded pile (C, SDL); mtslope - slope stability and displacement analysis using limit equilibrium (C,SDL); jswall - analysis of a diaphragm wall (JavaScript); jsmath - mathematics: polynomial equations, linear systems of equations, eigenvalues, matrix multiplication, matrix inversion (JavaScript); mtwall - obsolete program for analysing a diaphragm wall (C, SDL). ... -
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Simple Cylindrical Pressure Vessels
Excel workbooks suitable for preliminary design and analysis
SCPV is a family of three macro enabled Excel workbooks for analysis of long cylindrical pressure vessels with flat endcaps subjected to external hydrostatic pressure. CPVanalysis.xlsm does stress and stability analyses. It plots stresses, deflections and the equilibrium path for imperfect circular cylinders showing the onset of yielding and limit points in relation to elastic and inelastic bifurcation buckling pressures. Two types of initial geometric imperfections, outer diameter... -
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DAPS4e.6
A Fortran code for design and analysis of ring-stiffened shells
DAPS4e.6 is an updated version of a Fortran code by John Renzi and William Gordon for design and analysis of monocoque and ring-stiffened circular cylindrical shells [DOI: 10.13140/RG.2.2.18176.92165]. The following failure modes are considered: • Shell stresses and displacements at mid-bay and ring-frames. • Axisymmetric collapse (AC). • Elastic and Inelastic Interbay Buckling. (EIB and IIB). • Elastic and Inelastic Monocoque Instability (EMI and IMI). • Ring-frame stress and Elastic... -
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FEATool Multiphysics - FEA & CFD Toolbox
FEATool Multiphysics is an easy-to-use FEA and CFD Simulation Toolbox
FEATool Multiphysics (https://www.featool.com) is a fully integrated toolbox for computer aided engineering CAE, finite element analysis & fluid dynamics simulations. With a very easy-to-use GUI, anyone is now able to quickly set up and perform large scale dynamical and complex engineering physics simulations, with coupled fluid flow, heat transfer, structural mechanics, chemical transport, and electromagnetics effects, without having to learn complex programming. In addition to... -
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...Wave-function analysis; 12. Molecular-dynamics analysis; 13. Effective mass of carrier; 14. Symmetry finding and operations; 15. 3D band structures; More details can be found in its official website https://vaspkit.com.
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Layered-Wall Cylindrical Pressure Vessel
An Excel workbook suitable for preliminary design and analysis
...d. Three-layer sandwich-wall with isotropic outer layers and orthotropic core. Stress-strain solutions for all constructions are based on thick-wall three-dimensional elastic theory. Elastic Monocoque Instability pressure is calculated. Instructions on using each worksheet are given therein. 2. Technical notes outlining the underlying theory and discussing the above four types of PVs. -
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VOX-FE
Voxel-based Finite Element Analysis for Biomechanical Applications
VOX-FE is voxel-based FE software, developed jointly between the University of Hull's Medical & Biological Engineering Research Group and Edinburgh Parallel Computing Centre, with a sophisticated graphical user interface that allows the complex loading regimes that are inevitably present in biomechanical analyses to be readily applied to the model geometry, and the resultant 3D stress and strain patterns to be visualized easily. In addition to the introduction above, several example... -
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misc genomics tools
Various scripts used in sequencing, annotation and RNAseq analysis
This is a collection of various programs developed in the course of a genomics project, involving the Pseudomonas strain NCIMB10586 These include * identifying and correcting errors in an (eg) pacbio genome sequence using illumina reads * prokaryotic sequence/genome annotation * RNAseq analysis - normalisation and collation of multiple samples as a group * RNAseq visualisation All scripts are provided on a 'best efforts' basis, however due to various system changes I do not guarantee that all files are the version used in the analysis. ... -
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Modal Plotter
Create Strain and Kinetic Energy Density maps from FEA
Create Strain and Kinetic Energy Density maps out of a Natural Frequency extraction analysis (i.e. modal analysis). Works with a variety of FEA results format: NASTRAN, ABAQUS, Ansys, Medina/Permas. -
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LaueTools
open source python packages for X-ray MicroLaue Diffraction analysis
LaueTools is an open-source project for white beam Laue x-ray microdiffraction data analysis including tools in image processing, peaks searching & indexing, crystal structure solving (orientation & strain) and data & grain mapping visualisation. Python 3 Code and new features are now at: https://gitlab.esrf.fr/micha/lauetools -
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OptFlux is an open-source and modular software aimed at being the reference computational application in the field. It is the first tool to incorporate strain optimization tasks, i.e., the identification of Metabolic Engineering targets.
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Panacea
PAN And Core-gEnome Analysis
A tool to calculate the Pan-Genome of a set of annotated genomes -
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X-SOCS
X-ray Strain Orientation Calculation Software
The X-ray Strain Orientation Calculation Software (X-SOCS) is a user-friendly software, developed for automatic analysisof 5D sets of data recorded during continuous mapping measurements. X-SOCS aims at retrieving strain and tilt maps of nanostructures, films, surfaces or even embedded structures. For more information: http://scripts.iucr.org/cgi-bin/paper? -
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MASH
Macros for the Application of Shadow and McXtrace
MASH integrates X-ray ray-tracing programs and finite element analysis (FEA) of heat transfer, mechanical stress and strain with the aim to simulate experimental stations at 3rd and 4th generation X-ray sources (synchrotron light sources & free electron lasers). It comes with an HTML interface. -
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PanCGP
PanCGP: Pangenome and Comparative Genome Analysis Pipeline tool
...Those results are interpreted in the form of pan-genome, core genome/proteins, dispensable genes/proteins, unique/strain-specific genes/proteins, new gene/protein families and total number of genes per strain of the specie. It also extracts the corresponding protein sequences against pan-genome, core protein and dispensable protein sequences in separate FASTA formatted text files. The tabular text format can be used to render the final results in the form of visual graphs representing the trends in gene/protein sequence analysis. -
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GeoStrain
Geodynamic strain analysis software
The main purpose of the software is to calculate the crustal strain rates using the least-squares collocation method. The software can simultaneously determine the signal and noise of the velocities at the observation points with the best possible removal of the observation errors, or at any other position with no velocity observation. Furthermore, the software can calculate strain and rotation rate tensors at points of interest, including observation points, grid points, or points along a... -
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PhyloTrack
PhyloTrack, D3.js and JBrowse for phylogeny and positioning of samples
PhyloTrack is a JavaScript--based software tool that integrates the D3.js library for data visualization with the JBrowse tool for genome browser representation. It requires a phylogenetic tree of the common Newick data format as input, as well as three meta data files for samples, clade-defining nodes and clade color definitions - all in tab delimited format. Functionality within PhyloTrack shows the informative markers at each node in the phylogenetic tree, therefore highlighting... -
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YAFEMS
Yet Another Finite Element Method Solver
YAFEMS (Yet Another Finite Element Method Solver) is a FEM solver for Linux and WIndows that reads a MED mesh file produced by Salome (http://www.salome-platform.org/) with certain groups created into the mesh, and with the help of an input text file (.yaf), performs a 3D or 2D plane stress or plane strain analysis and creates results in plain text format and in MED format. This way a complete analysis can be carried inside Salome, where a mesh file can be created, exported and read by YAFEMS with the help of a .yaf input file and post-processed within Salome using ParaView. New in v0.4 - More performance boost due to the implementation of the Cuthill-McKee algorithm. -
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SIGMA
Strain-level Identification of Genomes from Metagenomic Analysis
SIGMA, a precise strain level genome identification and abundance estimation tool for metagenomic biosurveillance. -
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TASC NASA
Tool for Analysis of Surface Cracks (TASC)
TASC - 2014 NASA Software of the Year Co-Winner! TASC V1.0.2 is now available. - See users manual for release details Tool for Analysis of Surface Cracks (TASC) is a computer program created in MATLAB to enable easy computation of nonlinear J-integral solutions for surface cracked plates in tension by accessing and interpolating between the 600 nonlinear surface crack solutions documented in NASA/TP–2013-217480. The only required inputs are the surface crack dimensions (2c and a), plate cross-section dimensions (W and B), and linear plus power law material properties of elastic modulus, yield strength, and strain hardening coefficient. ... -
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fesslix
Stochastic Analysis
A brief summary of the main features of Fesslix: - Perform non-intrusive reliability analysis or Bayesian updating either --- by running commands on the command line or --- by means of an Octave interface or --- by means of a Python interface - Flexible input language for writing Fesslix parameter files --- Control flow statements (e.g. if, for, while) --- Most parameters can be defined as functions - Working with response surfaces - Linear finite element analysis using truss, beam and plane stress/strain elements - Spectral Stochastic Finite Elements - Bayesian networks This is the download page for Windows executables of Fesslix. -
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Concyl
Concentric Cylinder Stress Analysis Program
Concyl computes the stress state for a system of concentric cylinders under combined pressure and thermal loading. The program includes a plotting interface to Excel, a design optimizater, and detailed instructions with verification samples. -
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Coexlam
Free Excel software on composite laminate theory with added features.
Coexlam is a VBA Excel application that performs composite laminate analysis. Laminate theory is used with several strength criteria: maximal stress, maximal strain, Tsaï-Hill and Tasï-Wu. A help including a Getting Started part is now available in the application. The users can add their own formulas or application, an example is provided with a tank under pressure. Several load cases can be calculated in one time in the Print sheet.
